[AMBER] pseudo trajectories with 4 center of mass?

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From: Hirdesh Kumar <hirdesh.iitd.gmail.com>
Date: Thu, 3 Mar 2016 20:49:23 +0100

Hi,

Currently I am using vector command to save center of mass of one of the
sub-domain as:

*vector S1 center :1-27,65-139.CA,C,N,O trajout S1.mdcrd parmout
vector.prmtop out rt-vector*

But, my protein of interest consists 4 sub-domains and I need center of
mass of each subdomain..

How can generate pseudo trajectories (and prmtop file) of all four COMs??

Thanks,
Hirdesh
**
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Received on Thu Mar 03 2016 - 12:00:03 PST