[AMBER] python error when using pdb4amber

From: Elisa Pieri <elisa.pieri90.gmail.com>
Date: Mon, 18 Jan 2016 13:34:15 +0100

Dear all,

I know that my problem is more technical and (apparently) concerns my
python libraries, but I could not find anything helping online. I
successfully installed AmberTools15, and everything seems to work
fine. I am following the tutorial B5, but at the very first step, when
I try to use the pdb4amber, I get this error:

elisa.agachon:~/tutorials$ /home/elisa/amber14/bin/pdb4amber -i
1EMA.pdb -o gfp.pdb --dry --reduce
Traceback (most recent call last):
  File "/home/elisa/amber14/bin/pdb4amber", line 904, in <module>
    opt.constantph, opt.mostpop, opt.reduce, opt.model)
  File "/home/elisa/amber14/bin/pdb4amber", line 807, in run
    stdout=subprocess.PIPE, stderr=subprocess.PIPE)
  File "/usr/lib/python2.7/subprocess.py", line 710, in __init__
    errread, errwrite)
  File "/usr/lib/python2.7/subprocess.py", line 1327, in _execute_child
    raise child_exception
OSError: [Errno 2] No such file or directory

Can you help me?

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Received on Mon Jan 18 2016 - 05:00:03 PST
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