On Fri, Jan 15, 2016 at 6:15 AM, Ekaterina Ratkova <e.ratkova.mail.ru>
wrote:
>
> Dear Amber developers,
>
> I am trying to install AmberTools1.5 on EL Capitan OS X 10.11. According
> to the guide provided by Jason Swails
> http://jswails.wikidot.com/mac-os-x , I installed gcc, g++, and
> gfortran (version 4.9). I am able to install AmberTools1.3 with no problems
> with these settings. However, errors appear via the AmberTools1.5
> installation.
>
> At the stage of configuration for building serial amber ( $ ./configure
> -macAccelerate gnu ), everything works fine. I got errors during building
> the serial AT15 ($ make install). They start with:
> In file included from
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/locale:182:
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:70:20:
> error: use of undeclared identifier 'LC_COLLATE_MASK'
> collate = LC_COLLATE_MASK,
> ^
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:71:20:
> error: use of undeclared identifier 'LC_CTYPE_MASK'
> ctype = LC_CTYPE_MASK,
> ^
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__locale:72:20:
> error: use of undeclared identifier 'LC_MONETARY_MASK'
> monetary = LC_MONETARY_MASK,
> ^
> Then goes a long list of similar errors. At the end, I got the following:
> fatal error: too many errors emitted, stopping now [-ferror-limit=]
> 20 errors generated.
> error: command '/usr/bin/clang' failed with exit status 1
> make[1]: *** [serial] Error 1
> make: *** [install] Error 2
> I would highly appreciate if you kindly help me to solve this problem.
>
Why are you trying to install AmberTools 1.5? I have no idea if this will
work, as I have never tried (and never plan to ;)).
What about AmberTools 15? Does that work?
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Fri Jan 15 2016 - 07:30:04 PST
