Re: [AMBER] Problem when using lipid14 force filed in Amber 11

From: David A Case <>
Date: Tue, 12 Jan 2016 08:49:06 -0500

On Mon, Jan 11, 2016, Bin Wang wrote:
> This time I changed the HEP to HIP, and loaded the lipid14_supp.lib in the
> xleap, and the POPS is ok now. But there are other errors like these:
> Mapped residue GLY, term: Terminal/beginning, seq. number: 0 to: NGLY.
> (Residue 1: LYS, Nonterminal, was not found in name map.)
> (Residue 2: ARG, Nonterminal, was not found in name map.)


FWIW, these are not errors. It just means that "ARG" was not mapped into
something else. Note that the first GLY residue *was* mapped to NGLY.

(We should update the wording of this message, or consider
removing it entirely: it rarely helps with debugging.)


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Received on Tue Jan 12 2016 - 06:00:09 PST
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