[AMBER] Scripting CPPTRAJ Analysis Commands within a PBS Script

From: Robert Molt <rwmolt07.gmail.com>
Date: Sun, 10 Jan 2016 00:12:53 -0500

Good evening,

I wish to write a PBS script to analyze many trajectories using cpptraj.
However, I do not know how to load a list of commands into cpptraj after
opening cpptraj from a submission script (as one normally types the
analysis commands after it begins execution).

I apologize if this is more a computer science question to which I ought
know the answer than Amber. I have not been successful in searching the
Amber forums for an answer using a string of "cpptraj PBS" and the like

Dr. Robert Molt Jr.
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Received on Sat Jan 09 2016 - 21:30:04 PST
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