[AMBER] Membrane simulation without a membrane, only lipophilic solvent (membranemimetic)

From: sridhar ganesan <sridharganesan1990.gmail.com>
Date: Thu, 24 Sep 2015 21:10:43 -0600

Hello,

Dear Amber users/developers,

I would like to run very short (0.5-1 ns) simulation for membrane protein
without a membrane, in my understanding, I can do that by using other
lipophilic solvent than water, and I would like to know if this is
supported, tested in AMBER14.

I am asking if there might be a problem in performing MD simulation with
any of the available lipophilic solvents in AMBER, such as NMA or methanol.
And i appreciate if some one point me for reference/review that discuss
this issue.





King Regards,

Sri
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Received on Thu Sep 24 2015 - 20:30:04 PDT
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