[AMBER] setting a box

From: mohammad r <mohammad.r0325.yahoo.com>
Date: Thu, 10 Sep 2015 15:35:07 +0000 (UTC)

 Hi everybody;
I am new user toamber. I want to set a cubic box around my lipid-peptide system, Iknow that the “setBox” command do this, but I don't know how Ican specify the dimensions of the box and how to specify its center(indeed I want the dimensions to be constant). It isn't mentioned inthe tutorial. How can I specify these parameters?After this I want to Dissolve it in water andI don't know which command does it in tleap.
Thankyou, Mohammad.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Sep 10 2015 - 09:00:04 PDT
Custom Search