export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.pure_wat 2: Command not found. ./Run.pure_wat: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.pure_wat_nmr_temp_reg 2: Command not found. ./Run.pure_wat_nmr_temp_reg: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.vrand 2: Command not found. ./Run.vrand: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.frcdmp ./Run.frcdmp: line 28: 2: command not found ./Run.frcdmp: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat_oct && ./Run.pure_wat_oct 2: Command not found. ./Run.pure_wat_oct: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd alp && ./Run.alp 2: Command not found. ./Run.alp: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd cytosine && ./Run.cytosine 2: Command not found. ./Run.cytosine: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd dhfr && ./Run.dhfr 2: Command not found. ./Run.dhfr: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd dhfr && ./Run.dhfr.min 2: Command not found. ./Run.dhfr.min: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd dhfr && ./Run.dhfr.noshake 2: Command not found. ./Run.dhfr.noshake: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd ff14ipq && ./Run.ff14ipq 2: Command not found. ./Run.ff14ipq: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd variable_14 && ./Run.variable_14_ntb1 2: Command not found. ./Run.variable_14_ntb1: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd trx && ./Run.trx 2: Command not found. ./Run.trx: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd trx && ./Run.trx.cpln.pmemd 2: Command not found. ./Run.trx.cpln.pmemd: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna 2: Command not found. ./Run.gbrna: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.min 2: Command not found. ./Run.gbrna.min: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.ln 2: Command not found. ./Run.gbrna.ln: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd circ_dna && ./Run.circdna 2: Command not found. ./Run.circdna: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb2_trx && ./Run.trxox.nogbsa 2: Command not found. ./Run.trxox.nogbsa: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb7_trx && ./Run.trxox_md 2: Command not found. ./Run.trxox_md: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb8_trx && ./Run.trxox 2: Command not found. ./Run.trxox: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb8_trx && ./Run.trxox_md && ./Run.trxox_md prmtop_an 2: Command not found. ./Run.trxox_md: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gbneck2nu_test && ./Run.1hji_md 2: Command not found. ./Run.1hji_md: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd alpb_trx && ./Run.trxox.nogbsa 2: Command not found. ./Run.trxox.nogbsa: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb1_cox2 && ./Run.cox2 2: Command not found. ./Run.cox2: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gbsa_xfin && ./Run.gbsa 2: Command not found. ./Run.gbsa: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip4p && ./Run.tip4p 2: Command not found. ./Run.tip4p: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip4p && ./Run.tip4p_mcbar 2: Command not found. ./Run.tip4p_mcbar: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip4p && ./Run.tip4p_nve 2: Command not found. ./Run.tip4p_nve: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip5p && ./Run.tip5p 2: Command not found. ./Run.tip5p: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip5p && ./Run.tip5p_nve 2: Command not found. ./Run.tip5p_nve: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph/implicit && ./Run.cnstph ./Run.cnstph: line 34: 2: command not found ./Run.cnstph: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph/explicit && ./Run.cnstph ./Run.cnstph: line 31: 2: command not found ./Run.cnstph: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr && ./Run.dhfr_charmm.min 2: Command not found. ./Run.dhfr_charmm.min: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr && ./Run.dhfr_charmm.md 2: Command not found. ./Run.dhfr_charmm.md: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap && ./Run.dhfr_charmm.md 2: Command not found. ./Run.dhfr_charmm.md: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm_noshake.min 2: Command not found. ./Run.dhfr_cmap_pbc_charmm_noshake.min: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm_noshake.md 2: Command not found. ./Run.dhfr_cmap_pbc_charmm_noshake.md: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm.min 2: Command not found. ./Run.dhfr_cmap_pbc_charmm.min: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm.md 2: Command not found. ./Run.dhfr_cmap_pbc_charmm.md: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd amd && make -k test OPT=pmemd make[1]: Entering directory `/home/albert/install/amber14/test/amd' Testing AMD with PME 2: Command not found. ./Run.pme.amd1: Program error make[1]: [pme] Error 1 (ignored) 2: Command not found. ./Run.pme.amd2: Program error make[1]: [pme] Error 1 (ignored) 2: Command not found. ./Run.pme.amd3: Program error make[1]: [pme] Error 1 (ignored) Testing AMD with IPS 2: Command not found. ./Run.ips.amd1: Program error make[1]: [ips] Error 1 (ignored) 2: Command not found. ./Run.ips.amd2: Program error make[1]: [ips] Error 1 (ignored) 2: Command not found. ./Run.ips.amd3: Program error make[1]: [ips] Error 1 (ignored) Testing AMD with GB 2: Command not found. ./Run.gb.amd1: Program error make[1]: [gb] Error 1 (ignored) 2: Command not found. ./Run.gb.amd2: Program error make[1]: [gb] Error 1 (ignored) 2: Command not found. ./Run.gb.amd3: Program error make[1]: [gb] Error 1 (ignored) make[1]: Leaving directory `/home/albert/install/amber14/test/amd' export TESTsander='../../bin/pmemd.MPI'; cd scaledMD && make -k test OPT=pmemd make[1]: Entering directory `/home/albert/install/amber14/test/scaledMD' Testing scaledMD with PME 2: Command not found. ./Run.scaledMD: Program error make[1]: *** [pme] Error 1 make[1]: Target `test' not remade because of errors. make[1]: Leaving directory `/home/albert/install/amber14/test/scaledMD' make: [test.parallel.pmemd.basic] Error 2 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips 2: Command not found. ./Run.ips: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd csurften && ./Run.csurften_z-dir 2: Command not found. ./Run.csurften_z-dir: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd lj_12-6-4 && ./Run.12-6-4 2: Command not found. ./Run.12-6-4: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd csurften && ./Run.csurften_z-dir_npt_3 2: Command not found. ./Run.csurften_z-dir_npt_3: Program error make: [test.parallel.pmemd.basic] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd nmropt && make pmemd_compat make[1]: Entering directory `/home/albert/install/amber14/test/nmropt' cd gb/angle && ./Run.nmropt_1angle_gb ./Run.nmropt_1angle_gb: line 43: 2: command not found ./Run.nmropt_1angle_gb: Program error make[1]: [pmemd_compat_gb] Error 1 (ignored) cd gb/distance && ./Run.dist_gb ./Run.dist_gb: line 49: 2: command not found ./Run.dist_gb: Program error make[1]: [pmemd_compat_gb] Error 1 (ignored) cd gb/distance_COM && ./Run.distCOM_gb ./Run.distCOM_gb: line 49: 2: command not found ./Run.distCOM_gb: Program error make[1]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_distance && ./Run.jar_gb ./Run.jar_gb: line 47: 2: command not found ./Run.jar_gb: Program error make[1]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_distance_COM && ./Run.jar_gb ./Run.jar_gb: line 48: 2: command not found ./Run.jar_gb: Program error make[1]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_torsion && ./Run.jar_torsion ./Run.jar_torsion: line 45: 2: command not found ./Run.jar_torsion: Program error make[1]: [pmemd_compat_gb] Error 1 (ignored) cd gb/nmropt_1_torsion && ./Run.nmropt_1_torsion ./Run.nmropt_1_torsion: line 46: 2: command not found ./Run.nmropt_1_torsion: Program error make[1]: [pmemd_compat_gb] Error 1 (ignored) cd gb/tautp && ./Run.nmropt_1tautp_gb ./Run.nmropt_1tautp_gb: line 37: 2: command not found ./Run.nmropt_1tautp_gb: Program error make[1]: [pmemd_compat_gb] Error 1 (ignored) cd gb/temp && ./Run.nmropt_1temp_gb ./Run.nmropt_1temp_gb: line 37: 2: command not found ./Run.nmropt_1temp_gb: Program error make[1]: [pmemd_compat_gb] Error 1 (ignored) cd pme/angle && ./Run.nmropt_1angle_pbc ./Run.nmropt_1angle_pbc: line 44: 2: command not found ./Run.nmropt_1angle_pbc: Program error make[1]: [pmemd_compat_pme] Error 1 (ignored) cd pme/distance && ./Run.dist_pbc ./Run.dist_pbc: line 52: 2: command not found ./Run.dist_pbc: Program error make[1]: [pmemd_compat_pme] Error 1 (ignored) cd pme/distance_COM && ./Run.distCOM_pbc ./Run.distCOM_pbc: line 53: 2: command not found ./Run.distCOM_pbc: Program error make[1]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_torsion && ./Run.jar_torsion ./Run.jar_torsion: line 48: 2: command not found ./Run.jar_torsion: Program error make[1]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_distance && ./Run.jar_pbc ./Run.jar_pbc: line 52: 2: command not found ./Run.jar_pbc: Program error make[1]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_distance_COM && ./Run.jar_pbc ./Run.jar_pbc: line 52: 2: command not found ./Run.jar_pbc: Program error make[1]: [pmemd_compat_pme] Error 1 (ignored) cd pme/nmropt_1_torsion && ./Run.nmropt_1_torsion ./Run.nmropt_1_torsion: line 49: 2: command not found ./Run.nmropt_1_torsion: Program error make[1]: [pmemd_compat_pme] Error 1 (ignored) cd pme/tautp && ./Run.nmropt_1tautp_pbc ./Run.nmropt_1tautp_pbc: line 39: 2: command not found ./Run.nmropt_1tautp_pbc: Program error make[1]: [pmemd_compat_pme] Error 1 (ignored) cd pme/temp && ./Run.nmropt_1temp_pbc ./Run.nmropt_1temp_pbc: line 39: 2: command not found ./Run.nmropt_1temp_pbc: Program error make[1]: [pmemd_compat_pme] Error 1 (ignored) make[1]: Leaving directory `/home/albert/install/amber14/test/nmropt' export TESTsander='../../../bin/pmemd.MPI'; cd netcdf && make -k test OPT=/home/albert/install/amber14//include/netcdf.mod make[1]: Entering directory `/home/albert/install/amber14/test/netcdf' Netcdf MD Restart Write Test ./runmd.sh: line 32: 2: command not found ./runmd.sh: Program error make[1]: [mdrstwrite] Error 1 (ignored) Netcdf Minimization Restart Write Test ./runmin.sh: line 28: 2: command not found ./runmin.sh: Program error make[1]: [minrstwrite] Error 1 (ignored) Restrained MD with netcdf Restart Reference Coords Test ./runmd.sh: line 34: 2: command not found ./runmd.sh: Program error make[1]: [ncrefmd] Error 1 (ignored) Netcdf MD restart read test, ntx=5 ./runmd.sh: line 35: 2: command not found ./runmd.sh: Program error make[1]: [ntx5] Error 1 (ignored) Netcdf MD restart read test, ntx=1 ./runmd.sh: line 35: 2: command not found ./runmd.sh: Program error make[1]: [ntx1] Error 1 (ignored) make[1]: Leaving directory `/home/albert/install/amber14/test/netcdf' export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/campTI && ./Run.campTI 2: Command not found. ./Run.campTI: Program error make: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/pheMTI && ./Run.0 2: Command not found. ./Run.0: Program error make: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/pheMTI && ./Run.1 2: Command not found. ./Run.1: Program error make: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/pheMTI && ./Run.lambda0 2: Command not found. ./Run.lambda0: Program error make: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/pheMTI && ./Run.lambda1 2: Command not found. ./Run.lambda1: Program error make: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/sodium && ./Run.sodium 2: Command not found. ./Run.sodium: Program error make: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/ti_ggcc && ./Run.test1 2: Command not found. ./Run.test1: Program error make: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd pmemdTI/ti_ggcc && ./Run.test2 2: Command not found. ./Run.test2: Program error make: [test.parallel.pmemd.TI] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd pmemdTI/softcore && ./Run_sc Running the Softcore potential tests ============================================================== Minimization test 2: Command not found. ./Run.min: Program error Protein-Ligand complex test 2: Command not found. ./Run.complex: Program error ============================================================== Solvation free energy test 2: Command not found. ./Run.toluene: Program error 2: Command not found. ./Run.toluene2: Program error ============================================================== Dynamic lambda test 2: Command not found. ./Run.dynlmb: Program error ============================================================== Restrained complex test 2: Command not found. ./Run.complex_rst: Program error ============================================================== Using softcore electrostatics 2: Command not found. ./Run.ethanol: Program error ============================================================== Soft core test suite complete ============================================================== export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_wat1 && ./Run.amoeba_wat1.pmemd 2: Command not found. ./Run.amoeba_wat1.pmemd: Program error make: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_wat2 && ./Run.amoeba_wat2.pmemd 2: Command not found. ./Run.amoeba_wat2.pmemd: Program error make: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_wat2 && ./Run.ntpverlet.pmemd 2: Command not found. ./Run.ntpverlet.pmemd: Program error make: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_gb1 && ./Run.amoeba_gb1.pmemd 2: Command not found. ./Run.amoeba_gb1.pmemd: Program error make: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_jac && ./Run.amoeba_jac.pmemd 2: Command not found. ./Run.amoeba_jac.pmemd: Program error make: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_formbox && ./Run.amoeba_formbox.pmemd 2: Command not found. ./Run.amoeba_formbox.pmemd: Program error make: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.amoeba.MPI'; cd amoeba_softcore && ./Run.amoeba_softcore.pmemd 2: Command not found. ./Run.amoeba_softcore.pmemd: Program error make: [test.pmemd.amoeba.MPI] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips_sgld 2: Command not found. ./Run.ips_sgld: Program error make: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips_sgldfp 2: Command not found. ./Run.ips_sgldfp: Program error make: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips_sgldg 2: Command not found. ./Run.ips_sgldg: Program error make: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips_sgmdg 2: Command not found. ./Run.ips_sgmdg: Program error make: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.sgld 2: Command not found. ./Run.gbrna.sgld: Program error make: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.sgldfp 2: Command not found. ./Run.gbrna.sgldfp: Program error make: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.sgldg 2: Command not found. ./Run.gbrna.sgldg: Program error make: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.sgmdg 2: Command not found. ./Run.gbrna.sgmdg: Program error make: [test.parallel.pmemd.sgld] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd emap/ && ./Run.emap 2: Command not found. ./Run.emap: Program error make: [test.parallel.pmemd.emap] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd emil/emil_pmemd_gbsa && ./Run.emil EMIL DO_PARALLEL is set: 2 ./Run.emil: Program error make: [test.parallel.emil.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd emil/emil_pmemd_tip3p && ./Run.emil EMIL DO_PARALLEL is set: 2 ./Run.emil: Program error make: [test.parallel.emil.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd rem_gb_2rep && ./Run.rem ./Run.rem: line 19: 2: command not found ./Run.rem: line 22: [: too many arguments ./Run.rem: line 41: 2: command not found ./Run.rem: Program error make: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd rem_wat && ./Run.rem ./Run.rem: line 19: 2: command not found ./Run.rem: line 22: [: -lt: unary operator expected ./Run.rem: line 41: 2: command not found ./Run.rem: Program error make: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd rem_gb_4rep && ./Run.rem ./Run.rem: line 19: 2: command not found ./Run.rem: line 28: [: too many arguments ./Run.rem: line 48: 2: command not found ./Run.rem: Program error make: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd h_rem && ./Run.rem ./Run.rem: line 19: 2: command not found ./Run.rem: line 28: [: too many arguments ./Run.rem: line 60: 2: command not found ./Run.rem: Program error make: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI' && cd multid_remd && ./Run.multirem ./Run.multirem: line 19: 2: command not found ./Run.multirem: line 28: [: too many arguments ./Run.multirem: line 34: 2: command not found ./Run.multirem: Program error make: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd rxsgld_4rep && ./Run.rxsgld ./Run.rxsgld: line 23: 2: command not found ./Run.rxsgld: line 32: [: too many arguments ./Run.rxsgld: line 52: 2: command not found ./Run.rxsgld: Program error make: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph_remd/pHREM && ./Run.pHremd ./Run.pHremd: line 18: 2: command not found ./Run.pHremd: line 20: [: too many arguments ./Run.pHremd: line 26: [: -eq: unary operator expected ./Run.pHremd: line 39: 2: command not found ./Run.pHremd: Program error make: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph_remd/TempRem && ./Run.cnstph_remd ./Run.cnstph_remd: line 22: 2: command not found ./Run.cnstph_remd: line 25: [: -ne: unary operator expected ./Run.cnstph_remd: line 38: 2: command not found ./Run.cnstph_remd: Program error make: [test.pmemd.REM] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI'; cd cnstph_remd/Explicit_pHREM && ./Run.pHremd ./Run.pHremd: line 18: 2: command not found File "", line 1 print // 4 * 4 == ^ SyntaxError: invalid syntax File "", line 1 print and // 4 >= 2 ^ SyntaxError: invalid syntax ./Run.pHremd: line 44: 2: command not found ./Run.pHremd: Program error make: [test.pmemd.REM] Error 1 (ignored) Finished parallel test suite for Amber 14 at Tue Oct 29 06:00:37 CET 2013. Some tests require 4 threads to run, while some will not run with more than 2. Please run further parallel tests with the appropriate number of processors. See /home/albert/install/amber14//test/README. 0 file comparisons passed 0 file comparisons failed 119 tests experienced an error Test log file saved as /home/albert/install/amber14//logs/test_amber_parallel/2013-10-29_06-00-36.log No test diffs to save!