yes, I set the DO_PARALLEL environment by:
setenv DO_PARALLEL 2
then run the script test_amber_parallel.sh under test folder. Here is
what I got:
./Run.rem: Program error
make: [test.pmemd.REM] Error 1 (ignored)
export TESTsander='../../bin/pmemd.MPI' && cd rem_wat && ./Run.rem
./Run.rem: line 19: 2: command not found
./Run.rem: line 22: [: -lt: unary operator expected
./Run.rem: line 41: 2: command not found
./Run.rem: Program error
make: [test.pmemd.REM] Error 1 (ignored)
export TESTsander='../../bin/pmemd.MPI' && cd rem_gb_4rep && ./Run.rem
./Run.rem: line 19: 2: command not found
./Run.rem: line 28: [: too many arguments
./Run.rem: line 48: 2: command not found
./Run.rem: Program error
make: [test.pmemd.REM] Error 1 (ignored)
export TESTsander='../../bin/pmemd.MPI' && cd h_rem && ./Run.rem
./Run.rem: line 19: 2: command not found
./Run.rem: line 28: [: too many arguments
./Run.rem: line 60: 2: command not found
./Run.rem: Program error
make: [test.pmemd.REM] Error 1 (ignored)
export TESTsander='../../bin/pmemd.MPI' && cd multid_remd && ./Run.multirem
./Run.multirem: line 19: 2: command not found
./Run.multirem: line 28: [: too many arguments
./Run.multirem: line 34: 2: command not found
./Run.multirem: Program error
make: [test.pmemd.REM] Error 1 (ignored)
export TESTsander='../../bin/pmemd.MPI'; cd rxsgld_4rep && ./Run.rxsgld
./Run.rxsgld: line 23: 2: command not found
./Run.rxsgld: line 32: [: too many arguments
./Run.rxsgld: line 52: 2: command not found
./Run.rxsgld: Program error
make: [test.pmemd.REM] Error 1 (ignored)
export TESTsander='../../../bin/pmemd.MPI'; cd cnstph_remd/pHREM &&
./Run.pHremd
./Run.pHremd: line 18: 2: command not found
./Run.pHremd: line 20: [: too many arguments
./Run.pHremd: line 26: [: -eq: unary operator expected
./Run.pHremd: line 39: 2: command not found
./Run.pHremd: Program error
make: [test.pmemd.REM] Error 1 (ignored)
export TESTsander='../../../bin/pmemd.MPI'; cd cnstph_remd/TempRem &&
./Run.cnstph_remd
./Run.cnstph_remd: line 22: 2: command not found
./Run.cnstph_remd: line 25: [: -ne: unary operator expected
./Run.cnstph_remd: line 38: 2: command not found
./Run.cnstph_remd: Program error
make: [test.pmemd.REM] Error 1 (ignored)
export TESTsander='../../../bin/pmemd.MPI'; cd
cnstph_remd/Explicit_pHREM && ./Run.pHremd
./Run.pHremd: line 18: 2: command not found
File "<string>", line 1
print // 4 * 4 ==
^
SyntaxError: invalid syntax
File "<string>", line 1
print and // 4 >= 2
^
SyntaxError: invalid syntax
./Run.pHremd: line 44: 2: command not found
./Run.pHremd: Program error
make: [test.pmemd.REM] Error 1 (ignored)
Finished parallel test suite for Amber 14 at Tue Oct 29 06:00:37 CET 2013.
Some tests require 4 threads to run, while some will not
run with more than 2. Please run further parallel tests with the
appropriate number of processors. See
/home/albert/install/amber14//test/README.
0 file comparisons passed
0 file comparisons failed
119 tests experienced an error
Test log file saved as
/home/albert/install/amber14//logs/test_amber_parallel/2013-10-29_06-00-36.log
No test diffs to save!
On 07/15/2015 11:51 PM, case wrote:
> We don't know much about how your ran the tests. Are you sure you set the
> DO_PARALLEL environment variable correctly? Can you (re-)post a small
> fragment of the log file that shows the problem?
>
> ....dac
>
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Received on Thu Jul 16 2015 - 00:00:04 PDT
