[AMBER] water networks and bridge option of the hbond command in cpptraj

From: Vlad Cojocaru <vlad.cojocaru.mpi-muenster.mpg.de>
Date: Wed, 1 Jul 2015 19:44:49 +0200

Dear all,

I am looking into using the bridge option of the hbond command in ptraj
to look at water mediated contacts. However, if I got it correctly, the
bridge option only outputs cases in which one water bridges two solute
residues. Is there a way get bridges formed by more than one water (
water networks between solute residues).

Thanks for any hints on this

Best wishes
Vlad

-- 
Dr. Vlad Cojocaru
Computational Structural Biology Laboratory
Department of Cell and Developmental Biology
Max Planck Institute for Molecular Biomedicine
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
http://www.mpi-muenster.mpg.de/43241/cojocaru
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Received on Wed Jul 01 2015 - 11:00:02 PDT