[AMBER] water networks and bridge option of the hbond command in cpptraj

From: Vlad Cojocaru <vlad.cojocaru.mpi-muenster.mpg.de>
Date: Wed, 1 Jul 2015 19:44:49 +0200

Dear all,

I am looking into using the bridge option of the hbond command in ptraj
to look at water mediated contacts. However, if I got it correctly, the
bridge option only outputs cases in which one water bridges two solute
residues. Is there a way get bridges formed by more than one water (
water networks between solute residues).

Thanks for any hints on this

Best wishes

Dr. Vlad Cojocaru
Computational Structural Biology Laboratory
Department of Cell and Developmental Biology
Max Planck Institute for Molecular Biomedicine
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
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Received on Wed Jul 01 2015 - 11:00:02 PDT
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