On Tue, Jun 30, 2015, Jim Wu wrote:
>
> I am trying to configure Amber with ./configure gnu and I run into the
> following error:
>
> Checking NetCDF...
> Using bundled NetCDF library.
> Starting NetCDF build.
> Configuring NetCDF C interface (may be time-consuming)...
> Compiling the NetCDF C interface (may be time-consuming)...
> Error: NetCDF C compile failed.
>
> It says to check the netcdf.c.compile.log and the bottom of the file shows
> the following:
>
> ncgentab.o: In function `ignore':
> ncgentab.c:(.text+0x3ff6): undefined reference to `yyunput'
> collect2: ld returned 1 exit status
> make[1]: *** [ncgen3] Error 1
> make[1]: Leaving directory
> `/home.dft/jwu/amber14/AmberTools/src/netcdf-4.3.0/ncgen3'
> make: *** [install-recursive] Error 1
>
To get more info, in addition to what Jason asked:
What is the values of the LEX variables in your $AMBERHOME/config.h file?
What version of AmberTools do you have?
What does "flex --version" report?
...thanks....dac
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Received on Wed Jul 01 2015 - 06:00:05 PDT
