Re: [AMBER] Compile Failure

From: Jim Wu <jwu.g.hmc.edu>
Date: Tue, 30 Jun 2015 21:12:54 -0700

I am running on Red Hat Enterprise Linux WorkStation release 6.4.

Jim

On Tue, Jun 30, 2015 at 8:20 PM, Jason Swails <jason.swails.gmail.com>
wrote:

> On Tue, Jun 30, 2015 at 6:06 PM, Jim Wu <jwu.g.hmc.edu> wrote:
>
> > Hi,
> >
> > I am trying to configure Amber with ./configure gnu and I run into the
> > following error:
> >
> > Checking NetCDF...
> > Using bundled NetCDF library.
> > Starting NetCDF build.
> > Configuring NetCDF C interface (may be time-consuming)...
> > Compiling the NetCDF C interface (may be time-consuming)...
> > Error: NetCDF C compile failed.
> >
> > It says to check the netcdf.c.compile.log and the bottom of the file
> shows
> > the following:
> >
> > ncgentab.o: In function `ignore':
> > ncgentab.c:(.text+0x3ff6): undefined reference to `yyunput'
> >
>
> ‚ÄčThis is weird. yyunput is a flex symbol, which suggests to me that flex
> is not being linked correctly, is broken, or perhaps the development
> headers and libraries are not installed?
>
> It's going to be hard to help if someone can't reproduce this error...
> What OS are you running this on?
>
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Tue Jun 30 2015 - 21:30:02 PDT
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