Hi,
First, please don't just send the same email over and over to the list. You
sent your first email about a day ago - you need to give people time to
read your message and respond.
Second, have you read the 'lifetime' section of the Amber manual? Lifetimes
are given in frames.
Third, I highly recommend upgrading to the latest version of AmberTools
(15).
Hope this helps,
-Dan
On Sun, Jun 28, 2015 at 4:06 PM, zahra khatti <zkhatti2000.yahoo.com> wrote:
> Dear amber users
> I have run hbond and lifetime analysis in cpptraj using AmberTools14.the
> output look like this:
> #Set Nlifetimes MaxLT AvgLT TotFrames SetName
> 0 2 1 1.0000 2 WAT_178.O-QPT_2
> .N1-H1
> 1 2 1 1.0000 2 WAT_215.O-QPT_2
> .N1-H1
> But I don't about what is the lifetime in ps?please, anyone explain that
> to me.Thanks alot. Z. Khatti, Ph.D student of Physical Chemistry,
> Department of Chemistry, Iran University of Science & Technology,Tehran,
> Iran
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>
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Sun Jun 28 2015 - 16:00:02 PDT
