Hi
A membrane - heterodimer protein complex was constructed using Charmm-gui, babel and amber scripts.
In order to know that the system functions well as it supposed to, we want to try and reproduce some already-published results, or a known small system that can be compared to.
After investing long time in searching, we want to ask if you can direct
me to such kind of publication (all atom-simulation, small system,
membrane proteins or peptides in membrane and calculated with amber
force fields) or anything relevant (constructed
model, protocol and final numbers) that we can try and re-produce for
checking the reliability of what we do?
Any other ideas for a positive / negative controls?
Thank you for your time.
All the best,
Ofir.
Ofir Tal, PhD
Structural Bioinformatics
Bioinformatics Knowledge Unit - BKU
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Received on Tue May 26 2015 - 01:00:03 PDT
