[AMBER] Warning when trying to get RMS

From: Mohammad Salem <mohammad.alaraby.gmail.com>
Date: Thu, 14 May 2015 12:56:15 -0600

Dear all,

I get this error message from CPPTRAJ upon trying to get the RMSD from a protein trajectory:

"Warning: Coordinates are being rotated and box coordinates are present.
Warning: Unit cell vectors are NOT rotated; imaging will not be possible
Warning: after the RMS-fit is performed.”

Any insight?


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Received on Thu May 14 2015 - 12:00:03 PDT
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