On Sat, May 9, 2015 at 9:42 AM, Alaa Mohye El-din Soliman <
alaa.mohye.aucegypt.edu> wrote:
> Dear AMBER community,
>
> I have a problem with installing Amber12 and in particular with Configuring
> NetCDF
>
> The following is copied from the terminal
>
> alaa.alaa-HP-Pavilion-dv5-Notebook-PC ~/amber12 $ ./configure gnu
> > Checking for updates...
> > Checking for available patches online. This may take a few seconds...
> > Available AmberTools 13 patches:
> > No patches available
> > Available Amber 12 patches:
> > No patches available
> > Searching for python2... Found python2.7: /usr/bin/python2.7
> > Obtaining the gnu suite version:
> > gcc -v
> > The version is 4.8.2
> > Testing the gcc compiler:
> > gcc -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp
> > testp.c
> > OK
> > Testing the gfortran compiler:
> > gfortran -O0 -o testp testp.f
> > OK
> > Testing mixed C/Fortran compilation:
> > gcc -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o
> > testp.c.o testp.c
> > gfortran -O0 -c -o testp.f.o testp.f
> > gcc -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp
> > testp.c.o testp.f.o -lgfortran -w
> > OK
> > Testing pointer size:
> > gcc -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o
> > test_pointer_size test_pointer_size.c
> > Detected 32 bit operating system.
> > Testing flex: OK
> > Configuring NetCDF (may be time-consuming)...
> > Error: NetCDF configure returned 126
> > NetCDF configure failed! Check the netcdf_config.log file
> > in the /home/alaa/amber12/AmberTools/src directory.
> > Configure failed due to the errors above!
>
​Did you check netcdf_config.log inside $AMBERHOME/AmberTools/src? What
error does it have there?
Also, it says you are using a 32-bit operating system. Most modern
processors ship with a 64-bit CPU. Is that not the case for your laptop?
Is there a particular reason you chose a 32-bit operating system?
Finally, what OS *are* you using? Linux? Windows/Cygwin? Which Linux
distro?
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Sat May 09 2015 - 07:30:02 PDT
