Hi Friends,
I have NVIDIA K20C tesla card in my GPU workstation. i have installed
serial and parallel version of amber, but when i configured my cuda version
of amber11, it configured correctly, when i execute *make cuda. *It throws
an error:
make[3]: Entering directory
`/home/abhinav/Tools/AMBER11/amber11/src/pmemd/src/cuda'
cpp -traditional -P -DBINTRAJ -DDIRFRC_EFS -DDIRFRC_COMTRANS
-DDIRFRC_NOVEC -DFFTLOADBAL_2PROC -DPUBFFT -DCUDA cuda_info.fpp
cuda_info.f90
gfortran -O3 -mtune=generic -DCUDA -I/usr/local/cuda-7.0//include -IB40C
-IB40C/KernelCommon -c cuda_info.f90
Warning: Nonexistent include directory "B40C"
Warning: Nonexistent include directory "B40C/KernelCommon"
gcc -O3 -mtune=generic -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DBINTRAJ -DCUDA -I/usr/local/cuda-7.0//include -IB40C -IB40C/KernelCommon
-c gpu.cpp
gcc -O3 -mtune=generic -DSYSV -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-DBINTRAJ -DCUDA -I/usr/local/cuda-7.0//include -IB40C -IB40C/KernelCommon
-c gputypes.cpp
/usr/local/bin/gcc4.4 -use_fast_math -O3 -gencode
arch=compute_13,code=sm_13 -gencode arch=compute_20,code=sm_20 -DCUDA
-I/usr/local/cuda-7.0//include -IB40C -IB40C/KernelCommon -c
kForcesUpdate.cu
make[3]: execvp: /usr/local/bin/gcc4.4: Permission denied
make[3]: *** [kForcesUpdate.o] Error 127
make[3]: Leaving directory
`/home/abhinav/Tools/AMBER11/amber11/src/pmemd/src/cuda'
make[2]: *** [-L/usr/local/cuda-7.0//lib64] Error 2
make[2]: Leaving directory
`/home/abhinav/Tools/AMBER11/amber11/src/pmemd/src'
make[1]: *** [cuda] Error 2
make[1]: Leaving directory `/home/abhinav/Tools/AMBER11/amber11/src/pmemd'
make: *** [cuda] Error 2
Please suggest me how to fix this error. Thanks in advance.
--
*Thanks & Regards, G.L.Balasubramani,Research Fellow,*
*Lab No.98 & 107,c/o.Dr.Abhinav Grover,*
*School of Biotechnology (SBT)Jawaharlal Nehru University,*
*New Delhi-110067.Email : g <glbala87.imtech.res.in>lbala87.gmail.com
<lbala87.gmail.com>phone : +91-7042381251*
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Received on Thu May 07 2015 - 09:30:08 PDT
