Dear Amber list members,
I need to apply the amber CpHMD algorithm for pKa prediction and analysis
of Ser residues in protein.
What is a nickname of Ser used by this procedure and should I
define any additional parameters for Ser there?
Unfortunately I failed to find the answer in CpHMD tutorials
as well as in the Amber15 user manual.
Thank you,
Michael
*****************************
Michael Shokhen, PhD
Associate Professor
Department of Chemistry
Bar Ilan University,
Ramat Gan, 52900
Israel
email: michael.shokhen.gmail.com
email: shokhen.mail.biu.ac.il
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Received on Thu May 07 2015 - 04:00:02 PDT
