David,
I recently (April) installed amber14 tools from AmberTools14.tar.bz2
and I do not see
leaprc.parmbsc0_chiOL4_ezOL1
in my cmd directory
Did this require an update beyond whatever autoupdate is activated during
the install process?
If memory serves me, the amber14.pdf says this file will be forthcoming so I
downloaded the supplemental material from the original publication.
Tom
gua 111% ls -lta !$
ls -lta /usr/local/amber/amber14/dat/leap/cmd/leaprc.*
-rw-r--r--+ 1 501 cdrom 5542 Apr 8 13:27
/usr/local/amber/amber14/dat/leap/cmd/leaprc.ff14ipq
-rw-rw-r--+ 1 501 cdrom 5434 Apr 14 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.ff14SBonlysc
-rw-rw-r--+ 1 501 cdrom 5281 Apr 8 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.ff14SB
-rw-rw-r--+ 1 501 cdrom 538 Mar 8 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.modrna08
-rw-rw-r--+ 1 501 cdrom 2302 Mar 6 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.GLYCAM_06j-1
-rw-rw-r--+ 1 501 cdrom 555 Feb 27 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.constph
-rw-rw-r--+ 1 501 cdrom 5350 Feb 27 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.ff12SB
-rw-rw-r--+ 1 501 cdrom 1818 Feb 27 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.gaff
-rw-rw-r--+ 1 501 cdrom 1250 Feb 27 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.lipid14
-rw-rw-r--+ 1 501 cdrom 1714 Feb 27 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.phosaa10
-rw-rw-r--+ 1 501 cdrom 4559 Jan 3 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.ff03.r1
-rw-rw-r--+ 1 501 cdrom 4441 Jan 3 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.ff03ua
-rw-rw-r--+ 1 501 cdrom 4086 Jan 3 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.ffAM1
-rw-rw-r--+ 1 501 cdrom 4083 Jan 3 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.ffPM3
-rw-rw-r--+ 1 501 cdrom 1895 Jan 3 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.GLYCAM_06EPb
-rw-rw-r--+ 1 501 cdrom 1076 Jan 3 2014
/usr/local/amber/amber14/dat/leap/cmd/leaprc.lipid11
gua 112%
On 05/05/2015 06:44 AM, David A Case wrote:
On Tue, May 05, 2015, 王珍 wrote:
Hi all,I have seen you sent the force field (ff99 + bsc0 + ε/ζOL1+
χOL4) for DNA. I want to use the latest modified force field to
computate the DNA. Could you give me the nearest modified force
field(ff99 + bsc0 + ε/ζOL1+ χOL4) for DNA?
Please use leaprc.parmbsc0_chiOL4_ezOL1, which is in AMBERHOME/dat/leap/cmd
in the AmberTools15 distribution.
....dac
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Received on Tue May 05 2015 - 07:00:02 PDT
