[AMBER] RMSF & changes of the secondary structure of protein

From: shahab shariati <shahab.shariati.gmail.com>
Date: Mon, 23 Mar 2015 23:15:41 +0430

Dear amber users

I am beginner in amber.

I have experience with gromacs.

I did md simulation of my system (protein).

I want to do following analysis:

RMSF
changes of the secondary structure of protein

Can I use amber for these analysis?

Any help will highly appreciated.

Best wishes,
Shahab
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Received on Mon Mar 23 2015 - 12:00:03 PDT