There was a space after "z", as below:
[vector v1 principal z ]
This should be
[vector v1 principal z]
Regards
On Fri, Mar 13, 2015 at 11:40 AM, Vijay Achari <glycoamber.gmail.com> wrote:
> OK,
>
> Let me update the cpptraj and test it again.
> Vj
>
> On Fri, Mar 13, 2015 at 11:15 AM, Daniel Roe <daniel.r.roe.gmail.com>
> wrote:
>
>> On Thu, Mar 12, 2015 at 7:24 PM, Vijay Achari <glycoamber.gmail.com>
>> wrote:
>> > [vector v1 principal z ]
>> > VECTOR: Type Principal X, mask [*]
>> > Error: [vector] Not all arguments handled: [ z ]
>>
>> That's weird - when I run the same command I get:
>>
>> > vector v1 principal z
>> VECTOR: Type Principal Z, mask [*]
>>
>> I notice that your CPPTRAJ is a bit out of date. Try updating to the
>> latest version (14.25) and see if that helps. Also make sure all of
>> your cpptraj test cases are passing.
>>
>> -Dan
>>
>> > 1 errors encountered reading input.
>> > TIME: Total execution time: 0.0568 seconds.
>> >
>> > vijay.micelle
>> :~/Simulation/chapter6-lyo-paper3-Vj/lyo-Analysis2/struc-10-tail-to-Z-angle-distribution/Chain-Angle-distribution-betaLyo25perR$
>> >
>> >
>> > Thank you.
>> >
>> > On Thu, Mar 12, 2015 at 11:20 PM, Daniel Roe <daniel.r.roe.gmail.com>
>> wrote:
>> >
>> >> Hi,
>> >>
>> >> On Thu, Mar 12, 2015 at 8:00 AM, Vijay Achari <glycoamber.gmail.com>
>> >> wrote:
>> >> > *vector v1 principal z vector v2 :1.C50 :1.C80vectormath vec1 v1
>> >> vec2
>> >> > v2 out vectorTimesdat name chainAngle dotangle*
>> >> > But I get error.
>> >>
>> >> Your input is mangled - seems like your newlines are not making it to
>> >> your email. Make sure you're sending everything in plain text mode.
>> >> Also, don't just say you got an "error" - actually report the *exact*
>> >> error message, otherwise our chances of effectively helping you are
>> >> slim.
>> >>
>> >> -Dan
>> >>
>> >> --
>> >> -------------------------
>> >> Daniel R. Roe, PhD
>> >> Department of Medicinal Chemistry
>> >> University of Utah
>> >> 30 South 2000 East, Room 307
>> >> Salt Lake City, UT 84112-5820
>> >> http://home.chpc.utah.edu/~cheatham/
>> >> (801) 587-9652
>> >> (801) 585-6208 (Fax)
>> >>
>> >> _______________________________________________
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>>
>>
>> --
>> -------------------------
>> Daniel R. Roe, PhD
>> Department of Medicinal Chemistry
>> University of Utah
>> 30 South 2000 East, Room 307
>> Salt Lake City, UT 84112-5820
>> http://home.chpc.utah.edu/~cheatham/
>> (801) 587-9652
>> (801) 585-6208 (Fax)
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
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Received on Mon Mar 16 2015 - 03:30:05 PDT
