[AMBER] clustering in ptraj

From: Mary Varughese <maryvj1985.gmail.com>
Date: Mon, 9 Mar 2015 12:18:43 +0530


I read that there are different options to perform clustering in ptraj.
It would be helpful if you could give some suggestions on my problem.

I have a nucleic acid system which is a modelled one. have run a 50 ns
simulation (explicit).
obviously the starting structure may be some different from the probable
Which clustering algorithm do you think is suitable under such situation.

thanking you

Mary Varughese
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Received on Mon Mar 09 2015 - 00:00:02 PDT
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