Hello everyone,
I'm new to AMBER, so I was reading other emails about the same topic as
well as the user guide to start learning a little bit more.
Basically, I want to run a simulation with NAMD using AMBER force field.
Apparently it is not possible to use VMD's PSFgen plugin to obtain the
parameter file, so I'm learning how to do that through leap.
So far so good, I'm following a tutorial as well.
When I'm loading the molecule I found this error, I got that there's some
problem around the names of the residues in the PDB file and how AMBER
actually reads them but still I wasn't able to find any information about
what RU5 (and in general the syntax) is.
Can I receive some help regarding this matter?
Thanks
Mahad
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Received on Wed Jan 28 2015 - 09:30:04 PST
