[AMBER] How to write the Amber code(s) to calculate pi-pi stacking interactions, polar contacts

From: Jiapu Zhang <jiapu_zhang.hotmail.com>
Date: Fri, 23 Jan 2015 17:36:32 +1100

Dear Amber friends,

Can someone tell me how to write the Amber code(s) to calculate pi-pi stacking interactions, polar contacts between residues? Just to simply tell me the codes (for example, the codes like in the file analyse_hbond.ptraj at webpage of http://ambermd.org/tutorials/basic/tutorial3/section6.htm) is OK.

Thank you very much in advance.

Sincerely yours,
Jiapu Zhang

                                               
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Received on Thu Jan 22 2015 - 23:00:02 PST