[AMBER] Periodic image of iwrapped structure

From: Hadeer ELHabashy <hadeer.elhabashi.gmail.com>
Date: Mon, 19 Jan 2015 01:05:13 +0200

Dear Sir

wish you are fine !

I have ran a simulation on a protein in water box with iwrapped periodic
boundary conditions . and I have extracted the pdb and I expected to see
the water box is replicating itself around the protein however I found part
of the protein is out of the water box and no surrounding water (attached
screen shot by VMD). So, how can I see a periodic image of the protein in
the water box .

Regards
Hadeer


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Received on Sun Jan 18 2015 - 15:30:04 PST
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