Dear amber users
I have an mdcrd file obtained from amber 10. Now I don’t have AMBER and
only I want to do some analysis using cpptraj in AmberTools14. Thus, I want
to install AmberTools14 on Ubuntu.
Based on the chapter 2 of the Amber14 Reference Manual
<
http://ambermd.org/doc12/Amber14.pdf>, I have done following steps:
1) export AMBERHOME=/home/myname/amber14
2) sudo apt-get install build-essential gfortran libbz2-dev libz-dev
xorg-dev
3) tar -jxf AmberTools14.tar.bz2
During untarring, I encountered with
bzip2: Compressed file ends unexpectedly;
perhaps it is corrupted? *Possible* reason follows.
bzip2: Inappropriate ioctl for device
Input file = (stdin), output file = (stdout)
It is possible that the compressed file(s) have become corrupted.
You can use the -tvv option to test integrity of such files.
You can use the `bzip2recover' program to attempt to recover
data from undamaged sections of corrupted files.
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now
Then, I used bzip2recover AmberTools14.tar.bz2
4) cd $AMBERHOME
5) ./configure gnu
Checking for updates...
Checking for available patches online. This may take a few seconds...
I have a question. In earlier versions, I should use bugfixes. Isn’t it
necessary to use bugfixes in AmberTools14?
Is my installation manner true?
Any help will highly appreciated.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Jan 18 2015 - 10:30:02 PST
