[AMBER] Errors during Building Sidechain Model(MCPB program)

From: wjli <wenjuanli93.gmail.com>
Date: Thu, 15 Jan 2015 12:18:51 +0800

Dear Amber members,

I have created metal ion force field(containing one CU)successfully.This time ,I need to build force field with three copper ions.
 During the Building Sidechain Model‍ step,following errors:‍happened:
1.### ### ### ###
   ### MTK++ Error ###
   ### Function: connections::assignStdAngles ###
   ### Message: Please assign angles before assigning MM parameters for molecule: CU‍
   ### ### ### ###‍
 
2.### ### ### ###
 ### MTK++ Info ###
 ### Function: MCPB ###
 ### Message: createResidue
 ### ### ### ###

 ### ### ### ###
 ### MTK++ Info ###
 ### Function: MCPB ###
 ### Message: addToResidue
 ### ### ### ###

 ### ### ### ###
 ### MTK++ Info ###
 ### Function: selection::parse ###
 ### Message: selection string = /lac_3CU/CLR/CU2
 ### ### ### ###

 ### ### ### ###
 ### MTK++ Info ###
 ### Function: selection::parse ###
 ### Message: selection string = /lac_3CU/3/.CU-503/CU..
 ### ### ### ###

 ### ### ### ###
 ### MTK++ Error ###
 ### Function: selection::parse ###
 ### Message: /col/mol/smol/atom selection error (6) ... exiting
 ### ### ### ###

I think my selection grammar have no problem.You can find my sidechain.bcl in the attachment.

I look forward to your reply!
wjli‍

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j ngs?

Received on Wed Jan 14 2015 - 20:30:05 PST
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