Dear All,
I am Bikash from Osaka Univ. Japan. I am trying
to MD in Amber for a protein-ligand complex. The ligand is covalently
attached to two adjacent residues and are unnatural amino acids. How can I
perform MD for this complex retaining the covalent bonds between protein
and ligands. Removing the ligand is creating gap in the protein. Hoping a
positive response.
Thanking You
Sincerely
Bikash
Japan
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Received on Mon Oct 20 2014 - 00:30:02 PDT
