Date: Thu, 16 Oct 2014 16:26:49 +0200
Dear All;
It is not a technical problem related to AMBER but I think some of you
might suggest some interesting approach.
We obtained distance between some particular residues as well as dihedral
angle among some specified residues over a time scale of 50ns.
I am just interested is there any way to plot distance and dihedral angle
as a function of time with a 3D surface map or contour map approach (Say
for example X axis=Time, Y= distance; Z= dihedral).
Please also suggest any plausible software in this regard.
Attached a contour map we generated using Surfer.
Will appreciate any suggestion or opinion on this.
-- Thanks & Regards; Soumendranath Bhakat Researcher Molecular Modelling and Drug Design Research Group Discipline of Pharmaceutical Sciences UKZN, Westville Weblink: http://soliman.ukzn.ac.za/Home.aspx Past: Department of Pharmaceutical Sciences Birla Institute of Technology, Mesra, India in.linkedin.com/pub/soumendranath-bhakat/15/79b/b9/
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(image/jpeg attachment: contour_map.jpg)
