Re: [AMBER] TI and FEW

From: David A Case <case.biomaps.rutgers.edu>
Date: Wed, 15 Oct 2014 20:57:07 -0400

On Wed, Oct 15, 2014, sabine.ruppel.boehringer-ingelheim.com wrote:

>
> I'm looking for the example files for the FEW module to run TI
> calculations. They seem to be missing in my Amber14 installation. The
> tutorial on the Amber14 website for the TI calculations also refers to
> an older version. Could you please provide me with documentation on how
> to run TI calculation with Amber14?

More details (or detailed questions) would help here: it's hard to be sure
what you have read, or what you have tried.

The FEW files for TI are here:

  $AMBERHOME/AmberTools/src/FEW/examples/command_files/TI

There is addtional FEW information here (from the Reference Manual):

  http://cpclab.uni-duesseldorf.de/software

In addition, Section 31.6 of the Reference Manual goes into quite a bit of
detail about using FEW to carry out TI calculations.

It is true that the tutorials on the Amber web site refer to other ways to
carry out TI calculations, since there are many approaches to this with the
Amber suite of programs.

...hope this helps....dac


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Received on Wed Oct 15 2014 - 18:00:03 PDT
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