Hi Dac,
I did extract the files again and recompiled amber12 with Ambertools
successfully in Maverick OS X thank you.
Best,
Bergy
On Tue, Oct 7, 2014 at 3:46 PM, BERGY <nucleic81.gmail.com> wrote:
> ls -l suggested that all the file in it were built just at the time of
> compilation. no red flags there. I removed the lib folder and tried
> installing. but got the same error.
>
>
> On Tue, Oct 7, 2014 at 2:27 PM, David A Case <case.biomaps.rutgers.edu>
> wrote:
>
>> On Tue, Oct 07, 2014, BERGY wrote:
>> >
>> > I am trying to install AMBER12 and AMBERTOOLS13 in my MAC10.9 and
>> geeting
>> > the following error. I compiled it using"../configure --with-netcdf /my
>> > whateverpath/ gnu"
>> >
>> > Starting installation of Amber12 (serial) at Tue 7 Oct 2014 12:45:47
>> MDT.
>> >
>> > cd lib && /Applications/Xcode.app/Contents/Developer/usr/bin/make
>> install
>> >
>> > /bin/sh: line 0: cd: lib: Not a directory
>>
>> Go to $AMBERHOME/src and type "ls -l lib", and "file lib". Can you get
>> any
>> clues about what kind of file this is; does the date at which is way
>> created
>> offer any clues?
>>
>> Since Amber12 was released before MacOS 10.9 was, I'm guessing that you
>> may
>> have detritus left over from earlier compilations in the same directory
>> tree.
>> Is that possible? The simplest thing to try is to re-extract the files
>> from
>> the original tarballs into a fresh directory, and try to re-install
>> things.
>>
>> Living slightly more dangerously, you could remove "lib" (or rename it);
>> the
>> configure script will recreate the needed directory (as I remember).
>>
>> Upgrading to Amber14 is another possibility--it will bring in a ton of
>> improvements.
>>
>> ...good luck...dac
>>
>>
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>>
>
>
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Received on Tue Oct 07 2014 - 15:30:02 PDT
