[AMBER] help: MD on DNA

From: pradeep pant <pradeep.pant25.gmail.com>
Date: Fri, 3 Oct 2014 19:45:58 +0530

Can anyone please tell me what steps should I take to create prmtop and crd
file of a DNA.

I am not getting how to create these files even after learning it from
AMBER tutorial.

Whatever DNA pdb I am using it is showing some atoms are not in the residue
templates whem I am loading the pdb using tleap. H atoms are added byTleap
but missing residue template problem is still there.

Pradeep Pant
IIT Delhi
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Received on Fri Oct 03 2014 - 07:30:03 PDT
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