*Dear all, I am getting a error leap when i prepare the .prmtop & .inpcrd
files. How to resolve it? the pdb file is also attached herewith. Thanks in
advance*
*> saveamberparm dna dna_wat.prmtop dna_wat.inpcrd*
Checking Unit.
WARNING: The unperturbed charge of the unit: -23.000000 is not zero.
FATAL: Atom .R<DG5 1>.A<H 32> does not have a type.
FATAL: Atom .R<DG 4>.A<H 34> does not have a type.
FATAL: Atom .R<DG 7>.A<H 34> does not have a type.
FATAL: Atom .R<DG 10>.A<H 34> does not have a type.
FATAL: Atom .R<DG 13>.A<H 34> does not have a type.
FATAL: Atom .R<DG 16>.A<H 34> does not have a type.
FATAL: Atom .R<DG 19>.A<H 34> does not have a type.
FATAL: Atom .R<DG 22>.A<H 34> does not have a type.
Failed to generate parameters
Parameter file was not saved.
--
Vishal
Research Scholar,
Neuropharmaceutical Chemistry lab.,
Dr. B. R. Ambedkar Center for Biomedical Research,
University of Delhi, Delhi-110007
Email: *vishal.bioinfotech.gmail.com <vishal.bioinfotech.gmail.com>*
Phone: 91-11-27662778 Mobile: 91+9650736653
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Sep 29 2014 - 07:00:02 PDT
