[AMBER] Aligning a trajectory

From: Jonathan Gough <jonathan.d.gough.gmail.com>
Date: Wed, 17 Sep 2014 08:20:27 -0400

Hey All,

Is there a way to align or realign a trajectory to a reference frame? (I
would assume using cpptraj) if so, can someone point me in the right
direction?

What I mean is. Could I align each sequential frame to say the first frame.
That way I could run an analysis over the trajectory relative to a specific
set of points in space.

Thanks,
Jonathan.
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Received on Wed Sep 17 2014 - 05:30:05 PDT
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