Re: [AMBER] Problems to minimize with Sander

From: Jason Swails <jason.swails.gmail.com>
Date: Wed, 10 Sep 2014 21:39:17 -0400

> On Sep 10, 2014, at 5:54 PM, Maria Osorios <maria.osorios.usach.cl> wrote:
>
> Hi AMBER users:
>
> Now I'm trying to run the "min.in" file to minimize.
> I put in the console the instruction:
>
> sander -O -i test.in -o test.out -c cnt.inpcrd -p cnt.prmtop -r cnt.rst
>
>
> and the system tell me:
>
> At line 524 of file mdread.F90 (unit = 5, file = 'test.in')
> Fortran runtime error: End of file

This means that sander was trying to read information that it was expecting to find in the test.in file that wasn't there. Since you didn't post the actual file you used, that's all the information I can give.

HTH,
Jason

--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Wed Sep 10 2014 - 19:00:02 PDT
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