Re: [AMBER] ambpdb error

From: David A Case <>
Date: Tue, 19 Aug 2014 08:01:16 -0400

On Tue, Aug 19, 2014, Urszula Uciechowska wrote:
> My mistake, I am using *.rst file
> ambpdb -p *.prmtop <*.rst> *.pdb

Use a text editor to look at your rst file: are there any '*' characters in
it? Anything else that looks unusual? As Jason said, try converting with
cpptraj instead, just to see if that makes a difference. Note that ambpdb
cannot convert restart files created with ntxo=2.

[Aside to Dan: do you have any progress on the ambpdb script that calls
cpptraj? Or documentation about the --ambpdb flag to cpptraj?....thx]


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Received on Tue Aug 19 2014 - 05:30:03 PDT
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