I am using AMBER14, running on CentOS 6.4. I had an error which does not appear on the reflector list.
I followed the tutorial to the letter (except for the actual lipid, see below) and everything went smoothly up until the analysis part. I fed the input file into cpptraj using the following command as per the tutorial:
%cpptraj –i box_dimension.cpptraj –p DMPC_128.prmtop
(I made the lipid out of DMPC, rather than DOPC, since DMPC is biologically more relevant to me)
and this was the output:
CPPTRAJ: Trajectory Analysis. V14.05
___ ___ ___ ___
| \/ | \/ | \/ |
_|_/\_|_/\_|_/\_|_
Reading 'DMPC_128.prmtop' as Amber Topology
INPUT: Reading Input from file box_dimension.cpptraj
[trajin 04_Hold_1.nc]
Reading '04_Hold_1.nc' as Amber NetCDF
[trajin 04_Hold_2.nc]
Reading '04_Hold_2.nc' as Amber NetCDF
[trajin 04_Hold_3.nc]
Reading '04_Hold_3.nc' as Amber NetCDF
[trajin 04_Hold_4.nc]
Reading '04_Hold_4.nc' as Amber NetCDF
[trajin 04_Hold_5.nc]
Reading '04_Hold_5.nc' as Amber NetCDF
[trajin 04_Hold_6.nc]
Reading '04_Hold_6.nc' as Amber NetCDF
[trajin 04_Hold_7.nc]
Reading '04_Hold_7.nc' as Amber NetCDF
[trajin 04_Hold_8.nc]
Reading '04_Hold_8.nc' as Amber NetCDF
[trajin 04_Hold_9.nc]
Reading '04_Hold_9.nc' as Amber NetCDF
[trajin 04_Hold_10.nc]
Reading '04_Hold_10.nc' as Amber NetCDF
[trajin 05_Prod.nc]
Reading '05_Prod.nc' as Amber NetCDF
[vector test * box out vector.dat]
VECTOR: Type Box, output to vector.dat
Error: [vector] Not all arguments handled: [ * ]
1 errors encountered reading input.
TIME: Total execution time: 0.1289 seconds.
There was no output. What does that error mean:
Error: [vector] Not all arguments handled: [ * ] ?
Thank you,
Lee Shekter
Boston University
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Received on Fri Aug 01 2014 - 11:30:02 PDT
