Starting installation of MTK++ at Wed Jul 16 10:19:20 IST 2014. (cd mtkpp && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp' Making install in src make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src' Making install in Diagnostics make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Diagnostics' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Diagnostics' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libDiagnostics.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libDiagnostics.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libDiagnostics.la libtool: install: /usr/bin/install -c .libs/libDiagnostics.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libDiagnostics.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libDiagnostics.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libDiagnostics.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Diagnostics" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Diagnostics" /usr/bin/install -c -m 644 MTKException.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Diagnostics' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Diagnostics' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Diagnostics' Making install in tinyxml make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/tinyxml' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/tinyxml' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libtinyxml.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libtinyxml.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libtinyxml.la libtool: install: /usr/bin/install -c .libs/libtinyxml.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libtinyxml.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libtinyxml.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libtinyxml.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/tinyxml" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/tinyxml" /usr/bin/install -c -m 644 tinystr.h tinyxml.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/tinyxml' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/tinyxml' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/tinyxml' Making install in Log make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Log' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Log' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libLog.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libLog.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libLog.la libtool: install: /usr/bin/install -c .libs/libLog.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libLog.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libLog.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libLog.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Log" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Log" /usr/bin/install -c -m 644 error.h errorHandler.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Log' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Log' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Log' Making install in Statistics make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Statistics' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Statistics' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libStatistics.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libStatistics.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libStatistics.la libtool: install: /usr/bin/install -c .libs/libStatistics.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libStatistics.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libStatistics.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libStatistics.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Statistics" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Statistics" /usr/bin/install -c -m 644 table.h sheet.h BaseStats.h ols.h pca.h pls.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Statistics' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Statistics' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Statistics' Making install in Graph make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Graph' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Graph' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libGraph.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libGraph.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libGraph.la libtool: install: /usr/bin/install -c .libs/libGraph.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libGraph.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libGraph.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libGraph.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Graph" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Graph" /usr/bin/install -c -m 644 edge.h vertex.h graph.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Graph' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Graph' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Graph' Making install in Molecule make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Molecule' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Molecule' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libMolecule.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libMolecule.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMolecule.la libtool: install: /usr/bin/install -c .libs/libMolecule.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMolecule.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMolecule.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMolecule.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Molecule" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Molecule" /usr/bin/install -c -m 644 collection.h molecule.h submolecule.h atom.h element.h connections.h bond.h angle.h improper.h torsion.h ring.h conformer.h atomTyper.h atomType.h parameters.h stdLibrary.h stdGroup.h stdFrag.h protonate.h proProtonate.h ligProtonate.h watProtonate.h fingerPrint.h functionalize.h hydrophobize.h hybridize.h pharmacophore.h superimpose.h selection.h metalCenter.h seqAlign.h complex.h utility.h version.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Molecule' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Molecule' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Molecule' Making install in GA make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/GA' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/GA' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libGA.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libGA.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libGA.la libtool: install: /usr/bin/install -c .libs/libGA.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libGA.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libGA.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libGA.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/GA" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/GA" /usr/bin/install -c -m 644 gaWorld.h gaRegion.h gaPopulation.h gaIndividual.h gaChromosome.h gaGene.h gaOperators.h gaAverage.h gaCrossOver.h gaMutate.h gaGaussian.h gaSelection.h gaOutput.h gaVersion.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/GA' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/GA' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/GA' Making install in MM make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/MM' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/MM' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libMM.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libMM.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMM.la libtool: install: /usr/bin/install -c .libs/libMM.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMM.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMM.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMM.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/MM" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/MM" /usr/bin/install -c -m 644 mmPotential.h amber.h amberBond.h amberAngle.h amberTorsion.h amberImproper.h amberNonBonded.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/MM' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/MM' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/MM' Making install in Minimizers make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Minimizers' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Minimizers' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libMinimizers.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libMinimizers.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMinimizers.la libtool: install: /usr/bin/install -c .libs/libMinimizers.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMinimizers.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMinimizers.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libMinimizers.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Minimizers" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Minimizers" /usr/bin/install -c -m 644 lbfgs.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Minimizers' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Minimizers' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Minimizers' Making install in Parsers make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Parsers' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Parsers' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64" /bin/sh ../../libtool --mode=install /usr/bin/install -c libParsers.la '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64' libtool: install: /usr/bin/install -c .libs/libParsers.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libParsers.la libtool: install: /usr/bin/install -c .libs/libParsers.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libParsers.a libtool: install: chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libParsers.a libtool: install: ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libParsers.a libtool: finish: PATH="/home/bioinfo6.corp/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/opt/kde3/bin:/usr/lib/mit/bin:/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Parsers" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Parsers" /usr/bin/install -c -m 644 parsingException.h stdLibParser.h baseParser.h mtkppParser.h commLineOptions.h inputParser.h molParser.h mol2Parser.h pdbParser.h pamParser.h dcParser.h sdfParser.h xyzParser.h elementParser.h paramParser.h atomTypeParser.h gaParser.h StringManip.h domErrorHandler.h gaussianParser.h zmatParser.h prepParser.h acParser.h frcmodParser.h dMParser.h amberParser.h xmlConvertors.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Parsers' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Parsers' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Parsers' Making install in Utils make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Utils' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Utils' make[4]: Nothing to be done for `install-exec-am'. test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Utils" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Utils" /usr/bin/install -c -m 644 copyright.h printHeader.h constants.h diagonalize.h index.h DivConInterface.h object.h idObject.h inverseMatrix.h deleteItem.h randomNumbers.h vector3d.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp/Utils' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Utils' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src/Utils' make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src' make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/src' Making install in tools make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tools' make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tools' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c MTKppConstants capActiveSite frcmod2xml func hybrid mmE prep2xml protonator sequenceAligner stats superimposer stdLib2Sdf pdbSearcher MCPB '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin' libtool: install: /usr/bin/install -c MTKppConstants /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/MTKppConstants libtool: install: /usr/bin/install -c capActiveSite /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/capActiveSite libtool: install: /usr/bin/install -c frcmod2xml /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/frcmod2xml libtool: install: /usr/bin/install -c func /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/func libtool: install: /usr/bin/install -c hybrid /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/hybrid libtool: install: /usr/bin/install -c mmE /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/mmE libtool: install: /usr/bin/install -c prep2xml /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/prep2xml libtool: install: /usr/bin/install -c protonator /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/protonator libtool: install: /usr/bin/install -c sequenceAligner /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/sequenceAligner libtool: install: /usr/bin/install -c stats /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/stats libtool: install: /usr/bin/install -c superimposer /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/superimposer libtool: install: /usr/bin/install -c stdLib2Sdf /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/stdLib2Sdf libtool: install: /usr/bin/install -c pdbSearcher /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/pdbSearcher libtool: install: /usr/bin/install -c MCPB /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/MCPB make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tools' make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tools' Making install in tests make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tests' make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tests' make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tests' make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp' make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp' make[3]: Nothing to be done for `install-exec-am'. test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp" || /usr/bin/mkdir -p "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp" /usr/bin/install -c -m 644 config.h '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/mtkpp' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp' make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp' make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp' (cd mtkpp/tests && make create ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tests' make[1]: Nothing to be done for `create'. make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/mtkpp/tests' Completed installation of MTK++ Starting installation of AmberTools, version 1.5 serial at Wed Jul 16 10:19:22 IST 2014. (cd ucpp-1.3 && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/ucpp-1.3' gcc -o ucpp mem.o nhash.o cpp.o lexer.o assert.o macro.o eval.o mv ucpp /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/ucpp-1.3' (cd byacc && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/byacc' mv yacc /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/byacc' (cd arpack && make install ); make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/arpack' (cd lapack && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lapack' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrs.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dposv.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o dgesvd.o dgebrd.o dgebd2.o dlabrd.o dorgbr.o dbdsqr.o dgeqrf.o dormbr.o dgelqf.o dorglq.o dlas2.o dlasq1.o dlasv2.o dgelq2.o dorgl2.o dlasq2.o dormlq.o dlasq3.o dlasq4.o dlasq5.o dorml2.o dlasq6.o dgesv.o dgetrs.o dlaswp.o dgetrf.o dgetf2.o dsysv.o dsytrs.o dsytrf.o dlasyf.o dsytf2.o dgelsd.o dlalsd.o dlasdq.o dlasda.o dlalsa.o dlasd6.o dlals0.o dlasdt.o dlasd7.o dlasd8.o dlasd4.o dlasd5.o dgelsy.o dlaic1.o dtzrzf.o dormrz.o dlarzt.o dlarzb.o dlatrz.o dormr3.o dgeqp3.o dlarz.o dlaqps.o dlaqp2.o dspevx.o dsyevr.o dstegr.o dlarrv.o dlarre.o dlarrb.o dlar1v.o dlarrf.o dggev.o dhgeqz.o dgghrd.o dtgevc.o dggbak.o dggbal.o dlag2.o disnan.o dlaisnan.o dlarfp.o dstemr.o dlarra.o dlarrc.o dlarrd.o dlarrj.o dlarrk.o dlarrr.o dlaneg.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlahr2.o dormhr.o dtrexc.o dlaexc.o dlasy2.o iparmq.o iladlc.o iladlr.o ar: creating lapack.a a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrs.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dposv.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o a - dgesvd.o a - dgebrd.o a - dgebd2.o a - dlabrd.o a - dorgbr.o a - dbdsqr.o a - dgeqrf.o a - dormbr.o a - dgelqf.o a - dorglq.o a - dlas2.o a - dlasq1.o a - dlasv2.o a - dgelq2.o a - dorgl2.o a - dlasq2.o a - dormlq.o a - dlasq3.o a - dlasq4.o a - dlasq5.o a - dorml2.o a - dlasq6.o a - dgesv.o a - dgetrs.o a - dlaswp.o a - dgetrf.o a - dgetf2.o a - dsysv.o a - dsytrs.o a - dsytrf.o a - dlasyf.o a - dsytf2.o a - dgelsd.o a - dlalsd.o a - dlasdq.o a - dlasda.o a - dlalsa.o a - dlasd6.o a - dlals0.o a - dlasdt.o a - dlasd7.o a - dlasd8.o a - dlasd4.o a - dlasd5.o a - dgelsy.o a - dlaic1.o a - dtzrzf.o a - dormrz.o a - dlarzt.o a - dlarzb.o a - dlatrz.o a - dormr3.o a - dgeqp3.o a - dlarz.o a - dlaqps.o a - dlaqp2.o a - dspevx.o a - dsyevr.o a - dstegr.o a - dlarrv.o a - dlarre.o a - dlarrb.o a - dlar1v.o a - dlarrf.o a - dggev.o a - dhgeqz.o a - dgghrd.o a - dtgevc.o a - dggbak.o a - dggbal.o a - dlag2.o a - disnan.o a - dlaisnan.o a - dlarfp.o a - dstemr.o a - dlarra.o a - dlarrc.o a - dlarrd.o a - dlarrj.o a - dlarrk.o a - dlarrr.o a - dlaneg.o a - dlaqr0.o a - dlaqr1.o a - dlaqr2.o a - dlaqr3.o a - dlaqr4.o a - dlaqr5.o a - dlahr2.o a - dormhr.o a - dtrexc.o a - dlaexc.o a - dlasy2.o a - iparmq.o a - iladlc.o a - iladlr.o ranlib lapack.a mv lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lapack' (cd blas && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/blas' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o xerbla.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating blas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - xerbla.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib blas.a mv blas.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/blas' (cd c9x-complex && make skip ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/c9x-complex' using built-in (C99) complex.h functionality make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/c9x-complex' (cd etc && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/etc' cd ../lib && make sys2.a make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lib' make[2]: `sys2.a' is up to date. make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lib' gfortran -o ambpdb \ ambpdb.o forFIRSTtype.o forFIRSTbond.o forFIRSThbond.o forFIRSTteth.o forFIRSToutp.o forFIRSTsugar.o ../lib/sys2.a gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o elsize elsize.o -lm gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o molsurf molsurf.o -lm gfortran -o add_pdb \ add_pdb.o ../lib/sys2.a gfortran \ lapack.o resp.o -o resp gfortran -o calcpka calcpka.f90 ./py_setup.sh Using system python /bin/mv ambpdb elsize molsurf add_pdb resp calcpka /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin /bin/cp lmodprmtop process_mdout.perl process_minout.perl /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin /bin/cp convert_charmm_lipid_builder_pdb_to_amber.x /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin /bin/cp cpinutil softcore_setup.py extractFrcmod.py /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/etc' (cd chamber && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/chamber' make chamber make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/chamber' gfortran -ffree-form -o chamber main.o psfprm.o psf_strings.o write_prmtop.o gbradii.o sort.o mkexcl.o cmap.o molnt.o \ make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/chamber' mv chamber /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/chamber' (cd pbsa && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/pbsa' cd ../lib && make nxtsec.o random.o make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: `random.o' is up to date. make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lib' cd ../lapack && make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lapack' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrs.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dposv.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o dgesvd.o dgebrd.o dgebd2.o dlabrd.o dorgbr.o dbdsqr.o dgeqrf.o dormbr.o dgelqf.o dorglq.o dlas2.o dlasq1.o dlasv2.o dgelq2.o dorgl2.o dlasq2.o dormlq.o dlasq3.o dlasq4.o dlasq5.o dorml2.o dlasq6.o dgesv.o dgetrs.o dlaswp.o dgetrf.o dgetf2.o dsysv.o dsytrs.o dsytrf.o dlasyf.o dsytf2.o dgelsd.o dlalsd.o dlasdq.o dlasda.o dlalsa.o dlasd6.o dlals0.o dlasdt.o dlasd7.o dlasd8.o dlasd4.o dlasd5.o dgelsy.o dlaic1.o dtzrzf.o dormrz.o dlarzt.o dlarzb.o dlatrz.o dormr3.o dgeqp3.o dlarz.o dlaqps.o dlaqp2.o dspevx.o dsyevr.o dstegr.o dlarrv.o dlarre.o dlarrb.o dlar1v.o dlarrf.o dggev.o dhgeqz.o dgghrd.o dtgevc.o dggbak.o dggbal.o dlag2.o disnan.o dlaisnan.o dlarfp.o dstemr.o dlarra.o dlarrc.o dlarrd.o dlarrj.o dlarrk.o dlarrr.o dlaneg.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlahr2.o dormhr.o dtrexc.o dlaexc.o dlasy2.o iparmq.o iladlc.o iladlr.o ar: creating lapack.a a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrs.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dposv.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o a - dgesvd.o a - dgebrd.o a - dgebd2.o a - dlabrd.o a - dorgbr.o a - dbdsqr.o a - dgeqrf.o a - dormbr.o a - dgelqf.o a - dorglq.o a - dlas2.o a - dlasq1.o a - dlasv2.o a - dgelq2.o a - dorgl2.o a - dlasq2.o a - dormlq.o a - dlasq3.o a - dlasq4.o a - dlasq5.o a - dorml2.o a - dlasq6.o a - dgesv.o a - dgetrs.o a - dlaswp.o a - dgetrf.o a - dgetf2.o a - dsysv.o a - dsytrs.o a - dsytrf.o a - dlasyf.o a - dsytf2.o a - dgelsd.o a - dlalsd.o a - dlasdq.o a - dlasda.o a - dlalsa.o a - dlasd6.o a - dlals0.o a - dlasdt.o a - dlasd7.o a - dlasd8.o a - dlasd4.o a - dlasd5.o a - dgelsy.o a - dlaic1.o a - dtzrzf.o a - dormrz.o a - dlarzt.o a - dlarzb.o a - dlatrz.o a - dormr3.o a - dgeqp3.o a - dlarz.o a - dlaqps.o a - dlaqp2.o a - dspevx.o a - dsyevr.o a - dstegr.o a - dlarrv.o a - dlarre.o a - dlarrb.o a - dlar1v.o a - dlarrf.o a - dggev.o a - dhgeqz.o a - dgghrd.o a - dtgevc.o a - dggbak.o a - dggbal.o a - dlag2.o a - disnan.o a - dlaisnan.o a - dlarfp.o a - dstemr.o a - dlarra.o a - dlarrc.o a - dlarrd.o a - dlarrj.o a - dlarrk.o a - dlarrr.o a - dlaneg.o a - dlaqr0.o a - dlaqr1.o a - dlaqr2.o a - dlaqr3.o a - dlaqr4.o a - dlaqr5.o a - dlahr2.o a - dormhr.o a - dtrexc.o a - dlaexc.o a - dlasy2.o a - iparmq.o a - iladlc.o a - iladlr.o ranlib lapack.a mv lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lapack' cd ../blas && make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/blas' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o xerbla.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating blas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - xerbla.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib blas.a mv blas.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/blas' cd ../arpack && make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/arpack' gfortran -ffree-form -o pbsa dsvdc.o pbsa.o pb_read.o pb_write.o getcoor.o runmd.o runmin.o force.o pb_init.o sa_driver.o np_force.o pb_force.o pb_fddrv.o pb_iimdrv.o pb_nlsolver.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o timer.o egb.o ene.o locmem.o myopen.o rdparm.o pb_lsolver.o decomp.o rgroup.o rfree.o debug.o coed20.o indexg.o irre32.o phidev.o project.o qld.o coed6.o irre31.o miniop.o prodis.o qint.o wint.o transf.o curv.o GrToPr.o jumps.o problem.o IIM.o regular.o ctime.o gmres.o daxpy.o ddot.o dheqr.o dpigmr.o dscal.o dslui2.o dxlcal.o dchkw.o dgmres.o dnrm2.o drlcal.o dsilus.o dslui.o isdgmr.o dcopy.o dhels.o dorth.o ds2y.o dslugm.o dsmv.o qs2i1d.o d1mach.o fdump.o i1mach.o j4save.o xercnt.o xerhlt.o xermsg.o xerprn.o xersve.o xgetua.o amg.o aux1r5.o amg1r5.o bicg.o dbcg.o dslui4.o dsluti.o dsmtv.o dslubc.o isdbcg.o pb_chkfrc.o svdcmp.o svbksb.o pythag.o \ ../lib/nxtsec.o ../lib/random.o \ /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/blas.a /bin/mv pbsa /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/pbsa' (cd antechamber && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/antechamber' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ am1bcc.o -lm -o am1bcc gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ acdoctor.o -lm -o acdoctor gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ antechamber.o -lm -o antechamber gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ atomtype.o -lm -o atomtype gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ ncsu-penalties.o bondtype.o -lm -o bondtype gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ charmmgen.o -lm -o charmmgen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ crdgrow.o -lm -o crdgrow gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ database.o -lm -o database gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ espgen.o -o espgen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ parmcal.o -lm -o parmcal gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ parmchk.o -lm -o parmchk gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ prepgen.o -lm -o prepgen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ residuegen.o -lm -o residuegen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ respgen.o -lm -o respgen gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ translate.o -lm -o translate gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ top2ff.o -lm -o top2ff gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ top2mol2.o -lm -o top2mol2 mv -f am1bcc acdoctor antechamber atomtype bondtype charmmgen crdgrow database espgen parmcal parmchk prepgen residuegen respgen translate top2ff top2mol2 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/antechamber' (cd sqm && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/sqm' cd ../lapack; make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lapack' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrs.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dposv.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o dgesvd.o dgebrd.o dgebd2.o dlabrd.o dorgbr.o dbdsqr.o dgeqrf.o dormbr.o dgelqf.o dorglq.o dlas2.o dlasq1.o dlasv2.o dgelq2.o dorgl2.o dlasq2.o dormlq.o dlasq3.o dlasq4.o dlasq5.o dorml2.o dlasq6.o dgesv.o dgetrs.o dlaswp.o dgetrf.o dgetf2.o dsysv.o dsytrs.o dsytrf.o dlasyf.o dsytf2.o dgelsd.o dlalsd.o dlasdq.o dlasda.o dlalsa.o dlasd6.o dlals0.o dlasdt.o dlasd7.o dlasd8.o dlasd4.o dlasd5.o dgelsy.o dlaic1.o dtzrzf.o dormrz.o dlarzt.o dlarzb.o dlatrz.o dormr3.o dgeqp3.o dlarz.o dlaqps.o dlaqp2.o dspevx.o dsyevr.o dstegr.o dlarrv.o dlarre.o dlarrb.o dlar1v.o dlarrf.o dggev.o dhgeqz.o dgghrd.o dtgevc.o dggbak.o dggbal.o dlag2.o disnan.o dlaisnan.o dlarfp.o dstemr.o dlarra.o dlarrc.o dlarrd.o dlarrj.o dlarrk.o dlarrr.o dlaneg.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlahr2.o dormhr.o dtrexc.o dlaexc.o dlasy2.o iparmq.o iladlc.o iladlr.o ar: creating lapack.a a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrs.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dposv.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o a - dgesvd.o a - dgebrd.o a - dgebd2.o a - dlabrd.o a - dorgbr.o a - dbdsqr.o a - dgeqrf.o a - dormbr.o a - dgelqf.o a - dorglq.o a - dlas2.o a - dlasq1.o a - dlasv2.o a - dgelq2.o a - dorgl2.o a - dlasq2.o a - dormlq.o a - dlasq3.o a - dlasq4.o a - dlasq5.o a - dorml2.o a - dlasq6.o a - dgesv.o a - dgetrs.o a - dlaswp.o a - dgetrf.o a - dgetf2.o a - dsysv.o a - dsytrs.o a - dsytrf.o a - dlasyf.o a - dsytf2.o a - dgelsd.o a - dlalsd.o a - dlasdq.o a - dlasda.o a - dlalsa.o a - dlasd6.o a - dlals0.o a - dlasdt.o a - dlasd7.o a - dlasd8.o a - dlasd4.o a - dlasd5.o a - dgelsy.o a - dlaic1.o a - dtzrzf.o a - dormrz.o a - dlarzt.o a - dlarzb.o a - dlatrz.o a - dormr3.o a - dgeqp3.o a - dlarz.o a - dlaqps.o a - dlaqp2.o a - dspevx.o a - dsyevr.o a - dstegr.o a - dlarrv.o a - dlarre.o a - dlarrb.o a - dlar1v.o a - dlarrf.o a - dggev.o a - dhgeqz.o a - dgghrd.o a - dtgevc.o a - dggbak.o a - dggbal.o a - dlag2.o a - disnan.o a - dlaisnan.o a - dlarfp.o a - dstemr.o a - dlarra.o a - dlarrc.o a - dlarrd.o a - dlarrj.o a - dlarrk.o a - dlarrr.o a - dlaneg.o a - dlaqr0.o a - dlaqr1.o a - dlaqr2.o a - dlaqr3.o a - dlaqr4.o a - dlaqr5.o a - dlahr2.o a - dormhr.o a - dtrexc.o a - dlaexc.o a - dlasy2.o a - iparmq.o a - iladlc.o a - iladlr.o ranlib lapack.a mv lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lapack' cd ../blas; make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/blas' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o xerbla.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating blas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - xerbla.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib blas.a mv blas.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/blas' cd ../arpack && make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/arpack' cd ../lib; make sys.a make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lib' gfortran -ffree-form -o sqm constants.o findmask.o sqm.o xmin.o xminC.o amopen.o mexit.o assert.o timer_dummy.o nmlsrc.o qm_print_info.SQM.o qm2_energy.SQM.o qm2_read_nm_and_alloc.SQM.o qm2_scf.SQM.o qm2_dftb_scf.SQM.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_core_core_repulsion.o qm2_core_core_repulsion_dxyz.o qm2_iterator_mod.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_fock_predict.o qm_gb.o qm_zero_charges.o qm_assign_atom_types.o qm_link_atoms.o qm2_print_charges.o qmmm_qmtheorymodule.o qm2_pm6_hof_module.o qm2_dftb_module.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_get_qm_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o qm2_dftb_read_cm3.o qm2_dftb_cm3.o qm2_dftb_gb.o qm2_dftb_3rd_order.o qmmm_module.o \ /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/blas.a ../lib/sys.a mv sqm /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/sqm' (cd ptraj && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/ptraj' cd pdb && make make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/ptraj/pdb' ar rv libpdb.a pdbrun.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o ms.o ar: creating libpdb.a a - pdbrun.o a - pdb_read.o a - pdb_sprntf.o a - pdb_sscanf.o a - pdb_write.o a - ms.o ranlib libpdb.a mv libpdb.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/ptraj/pdb' cd ../arpack && make make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/arpack' ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dsarpack.o wallclock.o ar: creating arpack.a a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - dsarpack.o a - wallclock.o ranlib arpack.a mv arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/arpack' cd ../netcdf/src && make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' Making install in f90 make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/f90' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/f90' make[4]: Nothing to be done for `install-exec-am'. test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f90.3' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3/netcdf_f90.3' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" /usr/bin/install -c -m 644 'typesizes.mod' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include/typesizes.mod' /usr/bin/install -c -m 644 'netcdf.mod' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include/netcdf.mod' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/f90' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/f90' Making install in fortran make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/fortran' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/fortran' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64" test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" /usr/bin/install -c -m 644 'netcdf.inc' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include/netcdf.inc' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f77.3' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3/netcdf_f77.3' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/fortran' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/fortran' Making install in libsrc make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/libsrc' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/libsrc' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libnetcdf.la' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.la' /usr/bin/install -c .libs/libnetcdf.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.la /usr/bin/install -c .libs/libnetcdf.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.a chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.a ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.a PATH="$PATH:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" /usr/bin/install -c -m 644 'netcdf.h' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include/netcdf.h' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf.3' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3/netcdf.3' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/libsrc' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/libsrc' Making install in nctest make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nctest' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nctest' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nctest' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nctest' Making install in ncgen make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncgen' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncgen' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncgen' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin/ncgen' /usr/bin/install -c ncgen /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin/ncgen test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1" /usr/bin/install -c -m 644 './ncgen.1' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1/ncgen.1' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncgen' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncgen' Making install in ncdump make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncdump' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncdump' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncdump' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin/ncdump' /usr/bin/install -c ncdump /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin/ncdump test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1" /usr/bin/install -c -m 644 './ncdump.1' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1/ncdump.1' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncdump' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncdump' Making install in nf_test make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nf_test' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nf_test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nf_test' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nf_test' Making install in nc_test make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nc_test' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nc_test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nc_test' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nc_test' Making install in examples make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' Making install in C make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/C' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/C' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/C' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/C' Making install in CDL make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/CDL' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/CDL' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/CDL' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/CDL' Making install in F77 make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F77' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F77' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F77' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F77' Making install in F90 make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make install-am make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[6]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[4]: Nothing to be done for `install-exec-am'. make install-data-hook make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' +-------------------------------------------------------------+ | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o rdparm main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libpdb.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/blas.a -lgfortran /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libnetcdf.a -lm cd ../lapack && make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lapack' ar rv lapack.a dsyev.o dsygv.o dlansy.o dsytrd.o dorgtr.o dsteqr.o dsterf.o dlascl.o dlamch.o ilaenv.o dlassq.o dsytd2.o dlatrd.o dorgql.o dorgqr.o dlasrt.o dlaset.o dlanst.o dlaev2.o dlasr.o dlapy2.o dlartg.o dlae2.o dorg2r.o dlarft.o dlarfb.o dorg2l.o dlarfg.o dlarf.o dspev.o dlansp.o dsptrd.o dopgtr.o dppsv.o dspsv.o dgeev.o dsptrs.o dsptrf.o dpptrs.o dpptrf.o dgebak.o dtrevc.o dlacpy.o dhseqr.o dorghr.o dgehrd.o dgebal.o dlange.o dlabad.o dlahqr.o dlarfx.o dlanhs.o dlaln2.o dgehd2.o dlahrd.o dlanv2.o dladiv.o dgerq2.o dorm2r.o dlarnv.o dgeqr2.o dlaruv.o dspevd.o dstedc.o dopmtr.o dlaed0.o dlaed1.o dlaed7.o dlaeda.o dlaed8.o dlaed9.o dlamrg.o dlaed2.o dlaed3.o dpotrs.o dpotrf.o dsygst.o dpotf2.o dsygs2.o dposv.o dlaebz.o dlagtf.o dlagts.o dormqr.o dormql.o dorm2l.o dlaed4.o dlaed5.o dlaed6.o ieeeck.o dsyevx.o dsyevd.o dstebz.o dstein.o dormtr.o zheev.o lsame.o zlanhe.o zlascl.o zhetrd.o zungtr.o zsteqr.o zlassq.o zlatrd.o zhetd2.o zungql.o zungqr.o zlasr.o zlaset.o zlacgv.o zlarfg.o zung2l.o zlarft.o zlarfb.o zung2r.o dlapy3.o zladiv.o zlarf.o dgesvd.o dgebrd.o dgebd2.o dlabrd.o dorgbr.o dbdsqr.o dgeqrf.o dormbr.o dgelqf.o dorglq.o dlas2.o dlasq1.o dlasv2.o dgelq2.o dorgl2.o dlasq2.o dormlq.o dlasq3.o dlasq4.o dlasq5.o dorml2.o dlasq6.o dgesv.o dgetrs.o dlaswp.o dgetrf.o dgetf2.o dsysv.o dsytrs.o dsytrf.o dlasyf.o dsytf2.o dgelsd.o dlalsd.o dlasdq.o dlasda.o dlalsa.o dlasd6.o dlals0.o dlasdt.o dlasd7.o dlasd8.o dlasd4.o dlasd5.o dgelsy.o dlaic1.o dtzrzf.o dormrz.o dlarzt.o dlarzb.o dlatrz.o dormr3.o dgeqp3.o dlarz.o dlaqps.o dlaqp2.o dspevx.o dsyevr.o dstegr.o dlarrv.o dlarre.o dlarrb.o dlar1v.o dlarrf.o dggev.o dhgeqz.o dgghrd.o dtgevc.o dggbak.o dggbal.o dlag2.o disnan.o dlaisnan.o dlarfp.o dstemr.o dlarra.o dlarrc.o dlarrd.o dlarrj.o dlarrk.o dlarrr.o dlaneg.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlahr2.o dormhr.o dtrexc.o dlaexc.o dlasy2.o iparmq.o iladlc.o iladlr.o ar: creating lapack.a a - dsyev.o a - dsygv.o a - dlansy.o a - dsytrd.o a - dorgtr.o a - dsteqr.o a - dsterf.o a - dlascl.o a - dlamch.o a - ilaenv.o a - dlassq.o a - dsytd2.o a - dlatrd.o a - dorgql.o a - dorgqr.o a - dlasrt.o a - dlaset.o a - dlanst.o a - dlaev2.o a - dlasr.o a - dlapy2.o a - dlartg.o a - dlae2.o a - dorg2r.o a - dlarft.o a - dlarfb.o a - dorg2l.o a - dlarfg.o a - dlarf.o a - dspev.o a - dlansp.o a - dsptrd.o a - dopgtr.o a - dppsv.o a - dspsv.o a - dgeev.o a - dsptrs.o a - dsptrf.o a - dpptrs.o a - dpptrf.o a - dgebak.o a - dtrevc.o a - dlacpy.o a - dhseqr.o a - dorghr.o a - dgehrd.o a - dgebal.o a - dlange.o a - dlabad.o a - dlahqr.o a - dlarfx.o a - dlanhs.o a - dlaln2.o a - dgehd2.o a - dlahrd.o a - dlanv2.o a - dladiv.o a - dgerq2.o a - dorm2r.o a - dlarnv.o a - dgeqr2.o a - dlaruv.o a - dspevd.o a - dstedc.o a - dopmtr.o a - dlaed0.o a - dlaed1.o a - dlaed7.o a - dlaeda.o a - dlaed8.o a - dlaed9.o a - dlamrg.o a - dlaed2.o a - dlaed3.o a - dpotrs.o a - dpotrf.o a - dsygst.o a - dpotf2.o a - dsygs2.o a - dposv.o a - dlaebz.o a - dlagtf.o a - dlagts.o a - dormqr.o a - dormql.o a - dorm2l.o a - dlaed4.o a - dlaed5.o a - dlaed6.o a - ieeeck.o a - dsyevx.o a - dsyevd.o a - dstebz.o a - dstein.o a - dormtr.o a - zheev.o a - lsame.o a - zlanhe.o a - zlascl.o a - zhetrd.o a - zungtr.o a - zsteqr.o a - zlassq.o a - zlatrd.o a - zhetd2.o a - zungql.o a - zungqr.o a - zlasr.o a - zlaset.o a - zlacgv.o a - zlarfg.o a - zung2l.o a - zlarft.o a - zlarfb.o a - zung2r.o a - dlapy3.o a - zladiv.o a - zlarf.o a - dgesvd.o a - dgebrd.o a - dgebd2.o a - dlabrd.o a - dorgbr.o a - dbdsqr.o a - dgeqrf.o a - dormbr.o a - dgelqf.o a - dorglq.o a - dlas2.o a - dlasq1.o a - dlasv2.o a - dgelq2.o a - dorgl2.o a - dlasq2.o a - dormlq.o a - dlasq3.o a - dlasq4.o a - dlasq5.o a - dorml2.o a - dlasq6.o a - dgesv.o a - dgetrs.o a - dlaswp.o a - dgetrf.o a - dgetf2.o a - dsysv.o a - dsytrs.o a - dsytrf.o a - dlasyf.o a - dsytf2.o a - dgelsd.o a - dlalsd.o a - dlasdq.o a - dlasda.o a - dlalsa.o a - dlasd6.o a - dlals0.o a - dlasdt.o a - dlasd7.o a - dlasd8.o a - dlasd4.o a - dlasd5.o a - dgelsy.o a - dlaic1.o a - dtzrzf.o a - dormrz.o a - dlarzt.o a - dlarzb.o a - dlatrz.o a - dormr3.o a - dgeqp3.o a - dlarz.o a - dlaqps.o a - dlaqp2.o a - dspevx.o a - dsyevr.o a - dstegr.o a - dlarrv.o a - dlarre.o a - dlarrb.o a - dlar1v.o a - dlarrf.o a - dggev.o a - dhgeqz.o a - dgghrd.o a - dtgevc.o a - dggbak.o a - dggbal.o a - dlag2.o a - disnan.o a - dlaisnan.o a - dlarfp.o a - dstemr.o a - dlarra.o a - dlarrc.o a - dlarrd.o a - dlarrj.o a - dlarrk.o a - dlarrr.o a - dlaneg.o a - dlaqr0.o a - dlaqr1.o a - dlaqr2.o a - dlaqr3.o a - dlaqr4.o a - dlaqr5.o a - dlahr2.o a - dormhr.o a - dtrexc.o a - dlaexc.o a - dlasy2.o a - iparmq.o a - iladlc.o a - iladlr.o ranlib lapack.a mv lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lapack' cd ../blas && make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/blas' ar rv blas.a dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o dsbmv.o dscal.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dummy.o dzasum.o dznrm2.o idamax.o isamax.o lsame.o xerbla.o scopy.o sswap.o sscal.o sasum.o snrm2.o sdot.o ssyr2k.o saxpy.o sgemv.o ssyr2.o ssymv.o sgemm.o strmm.o strmv.o sger.o zher2k.o zswap.o zgemv.o zhemv.o zscal.o zdotc.o zaxpy.o zher2.o zdscal.o ztrmv.o zcopy.o ztrmm.o zgemm.o zgerc.o ar: creating blas.a a - dasum.o a - daxpy.o a - dcabs1.o a - dcopy.o a - ddot.o a - dgbmv.o a - dgemm.o a - dgemv.o a - dger.o a - dnrm2.o a - drot.o a - drotg.o a - dsbmv.o a - dscal.o a - dspmv.o a - dspr.o a - dspr2.o a - dswap.o a - dsymm.o a - dsymv.o a - dsyr.o a - dsyr2.o a - dsyr2k.o a - dsyrk.o a - dtbmv.o a - dtbsv.o a - dtpmv.o a - dtpsv.o a - dtrmm.o a - dtrmv.o a - dtrsm.o a - dtrsv.o a - dummy.o a - dzasum.o a - dznrm2.o a - idamax.o a - isamax.o a - lsame.o a - xerbla.o a - scopy.o a - sswap.o a - sscal.o a - sasum.o a - snrm2.o a - sdot.o a - ssyr2k.o a - saxpy.o a - sgemv.o a - ssyr2.o a - ssymv.o a - sgemm.o a - strmm.o a - strmv.o a - sger.o a - zher2k.o a - zswap.o a - zgemv.o a - zhemv.o a - zscal.o a - zdotc.o a - zaxpy.o a - zher2.o a - zdscal.o a - ztrmv.o a - zcopy.o a - ztrmm.o a - zgemm.o a - zgerc.o ranlib blas.a mv blas.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/blas' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o ptraj main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libpdb.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/blas.a -lgfortran /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libnetcdf.a -lm /bin/mv rdparm ptraj /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/ptraj' (cd cpptraj && make yes) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/cpptraj' cd src && make -f Makefile_at install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/cpptraj/src' cd ../../netcdf/src && make install make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' Making install in f90 make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/f90' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/f90' make[5]: Nothing to be done for `install-exec-am'. test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f90.3' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3/netcdf_f90.3' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" /usr/bin/install -c -m 644 'typesizes.mod' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include/typesizes.mod' /usr/bin/install -c -m 644 'netcdf.mod' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include/netcdf.mod' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/f90' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/f90' Making install in fortran make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/fortran' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/fortran' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64" test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" /usr/bin/install -c -m 644 'netcdf.inc' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include/netcdf.inc' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf_f77.3' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3/netcdf_f77.3' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/fortran' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/fortran' Making install in libsrc make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/libsrc' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/libsrc' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64" /bin/sh ../libtool --mode=install /usr/bin/install -c 'libnetcdf.la' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.la' /usr/bin/install -c .libs/libnetcdf.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.la /usr/bin/install -c .libs/libnetcdf.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.a chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.a ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64/libnetcdf.a PATH="$PATH:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include" /usr/bin/install -c -m 644 'netcdf.h' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/include/netcdf.h' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3" /usr/bin/install -c -m 644 './netcdf.3' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man3/netcdf.3' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/libsrc' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/libsrc' Making install in nctest make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nctest' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nctest' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nctest' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nctest' Making install in ncgen make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncgen' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncgen' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncgen' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin/ncgen' /usr/bin/install -c ncgen /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin/ncgen test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1" /usr/bin/install -c -m 644 './ncgen.1' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1/ncgen.1' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncgen' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncgen' Making install in ncdump make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncdump' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncdump' test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c 'ncdump' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin/ncdump' /usr/bin/install -c ncdump /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/bin/ncdump test -z "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1" || mkdir -p -- "/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1" /usr/bin/install -c -m 644 './ncdump.1' '/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/share/man/man1/ncdump.1' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncdump' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/ncdump' Making install in nf_test make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nf_test' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nf_test' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nf_test' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nf_test' Making install in nc_test make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nc_test' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nc_test' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nc_test' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/nc_test' Making install in examples make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' Making install in C make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/C' make[6]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/C' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/C' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/C' Making install in CDL make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/CDL' make[6]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/CDL' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/CDL' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/CDL' Making install in F77 make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F77' make[6]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F77' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F77' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F77' Making install in F90 make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make install-am make[6]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[7]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[7]: Nothing to be done for `install-exec-am'. make[7]: Nothing to be done for `install-data-am'. make[7]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[6]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples/F90' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[6]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src/examples' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[5]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[5]: Nothing to be done for `install-exec-am'. make install-data-hook make[6]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' +-------------------------------------------------------------+ | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[6]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[5]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/netcdf/src' g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o main.o main.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberNetcdf.o AmberNetcdf.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberParm.o AmberParm.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberTraj.o AmberTraj.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TrajFile.o TrajFile.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Frame.o Frame.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PtrajState.o PtrajState.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ArgList.o ArgList.cpp gcc -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ptrajmask.o ptrajmask.c g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Distance.o Action_Distance.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ParmFileList.o ParmFileList.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TrajinList.o TrajinList.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TrajoutList.o TrajoutList.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ReferenceList.o ReferenceList.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CoordFileList.o CoordFileList.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PtrajActionList.o PtrajActionList.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DataSet.o DataSet.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DataSetList.o DataSetList.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o vectormath.o vectormath.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o FrameList.o FrameList.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Rmsd.o Action_Rmsd.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Dihedral.o Action_Dihedral.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DataFile.o DataFile.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DataFileList.o DataFileList.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PDBfile.o PDBfile.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PtrajFile.o PtrajFile.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PDBfileRoutines.o PDBfileRoutines.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AtomMap.o AtomMap.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o BaseFileIO.o BaseFileIO.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StdFile.o StdFile.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GzipFile.o GzipFile.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberRestart.o AmberRestart.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Angle.o Action_Angle.cpp gcc -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o PtrajMpi.o PtrajMpi.c g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MpiFile.o MpiFile.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Strip.o Action_Strip.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action.o Action.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o RemdTraj.o RemdTraj.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AtomMask.o AtomMask.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o mapDataSet.o mapDataSet.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_DSSP.o Action_DSSP.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o stringDataSet.o stringDataSet.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Center.o Action_Center.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Bzip2File.o Bzip2File.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Hbond.o Action_Hbond.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o intDataSet.o intDataSet.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Image.o Action_Image.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Surf.o Action_Surf.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Radgyr.o Action_Radgyr.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Conflib.o Conflib.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Mask.o Action_Mask.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Closest.o Action_Closest.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o NetcdfRoutines.o NetcdfRoutines.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AmberRestartNC.o AmberRestartNC.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CpptrajStdio.o CpptrajStdio.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Mol2File.o Mol2File.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Mol2FileRoutines.o Mol2FileRoutines.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_NAstruct.o Action_NAstruct.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DistRoutines.o DistRoutines.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AxisType.o AxisType.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TorsionRoutines.o TorsionRoutines.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Pucker.o Action_Pucker.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Range.o Range.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Outtraj.o Action_Outtraj.cpp g++ -c -I/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Action_Rms2d.o Action_Rms2d.cpp g++ -o cpptraj main.o AmberNetcdf.o AmberParm.o AmberTraj.o TrajFile.o Frame.o PtrajState.o ArgList.o ptrajmask.o Action_Distance.o ParmFileList.o TrajinList.o TrajoutList.o ReferenceList.o CoordFileList.o PtrajActionList.o DataSet.o DataSetList.o vectormath.o FrameList.o Action_Rmsd.o Action_Dihedral.o DataFile.o DataFileList.o PDBfile.o PtrajFile.o PDBfileRoutines.o AtomMap.o BaseFileIO.o StdFile.o GzipFile.o AmberRestart.o Action_Angle.o PtrajMpi.o MpiFile.o Action_Strip.o Action.o RemdTraj.o AtomMask.o mapDataSet.o Action_DSSP.o stringDataSet.o Action_Center.o Bzip2File.o Action_Hbond.o intDataSet.o Action_Image.o Action_Surf.o Action_Radgyr.o Conflib.o Action_Mask.o Action_Closest.o NetcdfRoutines.o AmberRestartNC.o CpptrajStdio.o Mol2File.o Mol2FileRoutines.o Action_NAstruct.o DistRoutines.o AxisType.o TorsionRoutines.o Action_Pucker.o Range.o Action_Outtraj.o Action_Rms2d.o /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libnetcdf.a -lz -lbz2 mv cpptraj /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/ make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/cpptraj/src' make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/cpptraj' (cd reduce && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/reduce' installing ./toolclasses... make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/reduce/toolclasses' g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c UseCount.cpp -o UseCount.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Point3d.cpp -o Point3d.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Stringclass.cpp -o Stringclass.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c Hash.cpp -o Hash.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c utility.cpp -o utility.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sprintf.cpp -o column_sprintf.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c column_sscanf.cpp -o column_sscanf.o g++ -O -DCHARFUNCMACROS -DINCTEMPLATEDEFNS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLISTFRIENDFIX -c DisjointSets.cpp -o DisjointSets.o Loading libtoolclasses.a ... done make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/reduce/toolclasses' installing ./libpdb... make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/reduce/libpdb' g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_read.cpp -o pdb_read.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sprntf.cpp -o pdb_sprntf.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_sscanf.cpp -o pdb_sscanf.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_chars.cpp -o pdb_chars.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb_type.cpp -o pdb_type.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdb++.cpp -o pdb++.o g++ -O -DBOOLPREDEFINED -DHASSSCANFEXTERN -c pdbinput.cpp -o pdbinput.o Loading libpdb++.a ... done make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/reduce/libpdb' installing ./reduce_src... make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/reduce/reduce_src' g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o GraphToHoldScores.o GraphToHoldScores.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o reduce.o reduce.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CTab.o CTab.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ElementInfo.o ElementInfo.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o StdResH.o StdResH.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o ResBlk.o ResBlk.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomConn.o AtomConn.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomPositions.o AtomPositions.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o DotSph.o DotSph.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o Mover.o Mover.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotMethyl.o RotMethyl.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o RotDonor.o RotDonor.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o FlipMemo.o FlipMemo.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o CliqueList.o CliqueList.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o AtomDescr.o AtomDescr.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o PDBrec.o PDBrec.cpp g++ -c -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -o MoveableNode.o MoveableNode.cpp gcc -O3 -DAROMATICS_ACCEPT_HBONDS -DCHARFUNCMACROS -DBOOLPREDEFINED -DBRACKETOPERPARMS -DLEFT_JUSTIFY_NUC_RES_OK -DLISTFRIENDFIX -DINCTEMPLATEDEFNS -DHET_DICTIONARY='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt"' -I../libpdb -I../toolclasses -c -o hybrid_36_c.o hybrid_36_c.c g++ -o reduce GraphToHoldScores.o reduce.o CTab.o ElementInfo.o StdResH.o ResBlk.o AtomConn.o AtomPositions.o DotSph.o Mover.o RotMethyl.o RotDonor.o FlipMemo.o CliqueList.o AtomDescr.o PDBrec.o MoveableNode.o hybrid_36_c.o -L../libpdb -lpdb++ -L../toolclasses -ltoolclasses -lm mv reduce /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin gunzip -c -d ../reduce_wwPDB_het_dict.txt.gz > /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/reduce_wwPDB_het_dict.txt make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/reduce/reduce_src' make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/reduce' (cd leap && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap' Compiling basic programs cd src/leap && make installteLeap make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/leap' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o basics.o basics.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o sysdepend.o sysdepend.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o stringExtra.o stringExtra.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o varArray.o varArray.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o getline.o getline.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o avl.o avl.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_format.o pdb_format.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_read.o pdb_read.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sprntf.o pdb_sprntf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_sscanf.o pdb_sscanf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdb_write.o pdb_write.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o vector.o vector.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o zMatrix.o zMatrix.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o sort.o sort.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o bag.o bag.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hash.o hash.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dictionary.o dictionary.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o database.o database.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nVector.o nVector.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o ring.o ring.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o matrix.o matrix.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o fortran.o fortran.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o displayer.o displayer.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o assoc.o assoc.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o atom.o atom.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o byteArray.o byteArray.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o collection.o collection.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o container.o container.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o internal.o internal.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o list.o list.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o loop.o loop.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molecule.o molecule.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oDouble.o oDouble.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oInteger.o oInteger.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o oString.o oString.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o objekt.o objekt.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parmSet.o parmSet.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o residue.o residue.c residue.c: In function ‘ResidueConnect’: residue.c:336:17: warning: passing argument 1 of ‘AtomBondTo’ from incompatible pointer type [enabled by default] In file included from classes.h:56:0, from residue.c:58: atom.h:300:25: note: expected ‘ATOM’ but argument is of type ‘OBJEKT’ residue.c:336:17: warning: passing argument 2 of ‘AtomBondTo’ from incompatible pointer type [enabled by default] In file included from classes.h:56:0, from residue.c:58: atom.h:300:25: note: expected ‘ATOM’ but argument is of type ‘OBJEKT’ residue.c: In function ‘ResidueMutate’: residue.c:464:5: warning: passing argument 1 of ‘BuildFixInternals’ from incompatible pointer type [enabled by default] In file included from residue.c:60:0: build.h:57:14: note: expected ‘UNIT’ but argument is of type ‘RESIDUE’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o unit.o unit.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o unitio.o unitio.c unitio.c: In function ‘zUnitIOSaveAmberParmFormat’: unitio.c:4066:27: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from unitio.c:92:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ unitio.c:4066:27: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from unitio.c:92:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ unitio.c: In function ‘zUnitIOSaveAmberParmFormat_old’: unitio.c:6137:33: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from unitio.c:92:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ unitio.c:6137:33: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from unitio.c:92:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tripos.o tripos.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o graphUtil.o graphUtil.c graphUtil.c: In function ‘GraphUtilFindAllSmallestRingsAndRingGroups’: graphUtil.c:675:5: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from graphUtil.c:52:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘struct RINGSORTt *’ graphUtil.c:675:5: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from graphUtil.c:52:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o select.o select.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o amber.o amber.c amber.c: In function ‘uAmberReadUnitFromPrep’: amber.c:1039:25: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from amber.c:50:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘struct INPUTLINEt *’ amber.c:1039:25: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from amber.c:50:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o build.o build.c build.c: In function ‘bBuildFlipChiralityFor’: build.c:1902:4: warning: passing argument 1 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from build.c:62:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘struct COUNTATOMSt *’ build.c:1902:4: warning: passing argument 4 of ‘SortByInteger’ from incompatible pointer type [enabled by default] In file included from build.c:62:0: sort.h:46:13: note: expected ‘GENP’ but argument is of type ‘int *’ build.c:1908:5: warning: passing argument 1 of ‘GraphUtilFindAllSmallestRings’ from incompatible pointer type [enabled by default] In file included from build.c:63:0: graphUtil.h:59:13: note: expected ‘UNIT’ but argument is of type ‘CONTAINER’ build.c: In function ‘BuildInternalsForSimpleRings’: build.c:2186:5: warning: passing argument 1 of ‘GraphUtilFindAllSmallestRingsAndRingGroups’ from incompatible pointer type [enabled by default] In file included from build.c:63:0: graphUtil.h:56:13: note: expected ‘UNIT’ but argument is of type ‘CONTAINER’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o elements.o elements.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o library.o library.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o chirality.o chirality.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o minimizer.o minimizer.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o model.o model.c model.c: In function ‘zModelOrderAtoms’: model.c:499:3: warning: passing argument 1 of ‘Sift’ from incompatible pointer type [enabled by default] In file included from model.c:55:0: sort.h:55:13: note: expected ‘GENP’ but argument is of type ‘struct MODELATOMt *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parmLib.o parmLib.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pdbFile.o pdbFile.c pdbFile.c: In function ‘zPdbBuildCoordinatesForContainer’: pdbFile.c:1071:5: warning: passing argument 1 of ‘BuildFixInternals’ from incompatible pointer type [enabled by default] In file included from pdbFile.c:55:0: build.h:57:14: note: expected ‘UNIT’ but argument is of type ‘CONTAINER’ pdbFile.c: In function ‘zPdbAddAtom’: pdbFile.c:1190:9: warning: passing argument 1 of ‘BuildInternalsForContainer’ from incompatible pointer type [enabled by default] In file included from pdbFile.c:55:0: build.h:54:14: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ pdbFile.c: In function ‘writeTER’: pdbFile.c:1744:25: warning: initialization from incompatible pointer type [enabled by default] gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mol2File.o mol2File.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tools.o tools.c tools.c: In function ‘iToolDistanceSearch’: tools.c:1648:9: warning: passing argument 1 of ‘SortByDouble’ from incompatible pointer type [enabled by default] In file included from tools.c:64:0: sort.h:48:13: note: expected ‘GENP’ but argument is of type ‘struct PAIRt *’ tools.c:1648:9: warning: passing argument 4 of ‘SortByDouble’ from incompatible pointer type [enabled by default] In file included from tools.c:64:0: sort.h:48:13: note: expected ‘GENP’ but argument is of type ‘double *’ tools.c: In function ‘ToolOrientPrincipleAxisAlongCoordinateAxis’: tools.c:1719:5: warning: passing argument 2 of ‘MathOpDiagonalize’ from incompatible pointer type [enabled by default] In file included from tools.c:62:0: mathop.h:48:13: note: expected ‘VECTORASPTR’ but argument is of type ‘struct VECTOR *’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o variables.o variables.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o parser.o parser.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o help.o help.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o utilMakeHelp.o utilMakeHelp.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o utilMakeHelp basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o utilMakeHelp.o -lm ./utilMakeHelp helptext.text helptext.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o helptext.o helptext.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o octree.o octree.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o commands.o commands.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o mathop.o mathop.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o block.o block.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o restraint.o restraint.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hybrid.o hybrid.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tLeap.o tLeap.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lm mv teLeap /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/leap' Copying shell script cp tleap /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/tleap chmod +x /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/tleap make install_xleap make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap' cd src/Wc && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/Wc' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MapAg.o MapAg.c MapAg.c: In function ‘MapAg_FirstGuessAtHashAlgorithm’: MapAg.c:191:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:210:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:227:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_ReHashUnderCollisionLimit’: MapAg.c:290:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:290:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:290:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:309:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:309:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:309:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_ReHash’: MapAg.c:349:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:349:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:349:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_Find_Normal’: MapAg.c:455:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:455:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:455:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_Define_Initial’: MapAg.c:492:19: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:492:19: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:492:19: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_Define_Normal’: MapAg.c:505:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:505:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:505:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:527:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:527:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:527:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:532:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:532:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:532:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c: In function ‘MapAg_Forget_Normal’: MapAg.c:608:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:608:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] MapAg.c:608:16: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcActCB.o WcActCB.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcConvert.o WcConvert.c WcConvert.c: In function ‘WcxClosureFromSeg’: WcConvert.c:504:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcConvert.c:510:6: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcConvert.c: In function ‘WcxBuildCallbackList’: WcConvert.c:592:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcCreate.o WcCreate.c WcCreate.c: In function ‘WcxCreateFromQuark’: WcCreate.c:321:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c:323:20: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c:350:14: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c:352:14: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcCreate.c:354:14: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcInvoke.o WcInvoke.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcLateBind.o WcLateBind.c WcLateBind.c: In function ‘WcxLateBinder_BindFromRegistration’: WcLateBind.c:394:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcLateBind.c:394:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcLateBind.c:400:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcLateBind.c: In function ‘WcxFindObject_DefaultSearch’: WcLateBind.c:434:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcLoadRes.o WcLoadRes.c WcLoadRes.c: In function ‘WcLoadResourceFile’: WcLoadRes.c:145:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcLoadRes.c:150:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcName.o WcName.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcReg.o WcReg.c WcReg.c: In function ‘WcRegisterClassPtr’: WcReg.c:47:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterClassName’: WcReg.c:55:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterConstructor’: WcReg.c:69:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterDynamicLibs’: WcReg.c:125:2: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterCallback’: WcReg.c:169:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcRegisterMethod’: WcReg.c:203:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c:203:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcAttachThisToWidget’: WcReg.c:227:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcReg.c: In function ‘WcDetachThisFromWidget’: WcReg.c:239:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcRegXt.o WcRegXt.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcSetValue.o WcSetValue.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcTemplate.o WcTemplate.c WcTemplate.c: In function ‘WcxDumpEntry’: WcTemplate.c:285:29: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] WcTemplate.c:288:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] WcTemplate.c: In function ‘WcTemplateInitialize’: WcTemplate.c:476:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcTemplate.c:476:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] WcTemplate.c:493:6: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcTemplate.c:507:6: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] WcTemplate.c: In function ‘WcApplyTemplate’: WcTemplate.c:645:31: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcWarn.o WcWarn.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WcNameWidget.o WcNameWidget.c ar rv libWcLeap.a MapAg.o WcActCB.o WcConvert.o WcCreate.o WcInvoke.o WcLateBind.o WcLoadRes.o WcName.o WcReg.o WcRegXt.o WcSetValue.o WcTemplate.o WcWarn.o WcNameWidget.o ar: creating libWcLeap.a a - MapAg.o a - WcActCB.o a - WcConvert.o a - WcCreate.o a - WcInvoke.o a - WcLateBind.o a - WcLoadRes.o a - WcName.o a - WcReg.o a - WcRegXt.o a - WcSetValue.o a - WcTemplate.o a - WcWarn.o a - WcNameWidget.o ranlib libWcLeap.a make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/Wc' cd src/Xmu && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/Xmu' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AllCmap.o AllCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Atoms.o Atoms.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ClientWin.o ClientWin.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Clip.o Clip.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CloseHook.o CloseHook.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CmapAlloc.o CmapAlloc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrCmap.o CrCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CrPixFBit.o CrPixFBit.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CursorName.o CursorName.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtCache.o CvtCache.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o CvtStdSel.o CvtStdSel.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DefErrMsg.o DefErrMsg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DelCmap.o DelCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DisplayQue.o DisplayQue.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Distinct.o Distinct.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrawLogo.o DrawLogo.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o DrRndRect.o DrRndRect.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o EditresCom.o EditresCom.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ExtAgent.o ExtAgent.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o FToCback.o FToCback.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GetHost.o GetHost.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o GrayPixmap.o GrayPixmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Initer.o Initer.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LocBitmap.o LocBitmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lookup.o Lookup.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o LookupCmap.o LookupCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Lower.o Lower.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o RdBitF.o RdBitF.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrOfWin.o ScrOfWin.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ShapeWidg.o ShapeWidg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StdCmap.o StdCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBS.o StrToBS.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToBmap.o StrToBmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToCurs.o StrToCurs.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToGrav.o StrToGrav.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToJust.o StrToJust.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToLong.o StrToLong.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToOrnt.o StrToOrnt.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToShap.o StrToShap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StrToWidg.o StrToWidg.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o UpdMapHint.o UpdMapHint.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o VisCmap.o VisCmap.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o WidgetNode.o WidgetNode.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Xct.o Xct.c ar rv libXmu.a AllCmap.o Atoms.o ClientWin.o Clip.o CloseHook.o CmapAlloc.o CrCmap.o CrPixFBit.o CursorName.o CvtCache.o CvtStdSel.o DefErrMsg.o DelCmap.o DisplayQue.o Distinct.o DrawLogo.o DrRndRect.o EditresCom.o ExtAgent.o FToCback.o GetHost.o GrayPixmap.o Initer.o LocBitmap.o Lookup.o LookupCmap.o Lower.o RdBitF.o ScrOfWin.o ShapeWidg.o StdCmap.o StrToBS.o StrToBmap.o StrToCurs.o StrToGrav.o StrToJust.o StrToLong.o StrToOrnt.o StrToShap.o StrToWidg.o UpdMapHint.o VisCmap.o WidgetNode.o Xct.o ar: creating libXmu.a a - AllCmap.o a - Atoms.o a - ClientWin.o a - Clip.o a - CloseHook.o a - CmapAlloc.o a - CrCmap.o a - CrPixFBit.o a - CursorName.o a - CvtCache.o a - CvtStdSel.o a - DefErrMsg.o a - DelCmap.o a - DisplayQue.o a - Distinct.o a - DrawLogo.o a - DrRndRect.o a - EditresCom.o a - ExtAgent.o a - FToCback.o a - GetHost.o a - GrayPixmap.o a - Initer.o a - LocBitmap.o a - Lookup.o a - LookupCmap.o a - Lower.o a - RdBitF.o a - ScrOfWin.o a - ShapeWidg.o a - StdCmap.o a - StrToBS.o a - StrToBmap.o a - StrToCurs.o a - StrToGrav.o a - StrToJust.o a - StrToLong.o a - StrToOrnt.o a - StrToShap.o a - StrToWidg.o a - UpdMapHint.o a - VisCmap.o a - WidgetNode.o a - Xct.o ranlib libXmu.a make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/Xmu' cd src/Xpm && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/Xpm' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o data.o data.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o create.o create.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o misc.o misc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o rgb.o rgb.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o scan.o scan.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o parse.o parse.c parse.c: In function ‘ParseColors’: parse.c:317:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] parse.c:399:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] parse.c: In function ‘ParsePixels’: parse.c:526:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o hashtable.o hashtable.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrI.o XpmCrBufFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrP.o XpmCrDataFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrBuf.o XpmCrPFrBuf.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToI.o XpmRdFToI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrI.o XpmWrFFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrBufFrP.o XpmCrBufFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrBuf.o XpmCrIFrBuf.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrPFrData.o XpmCrPFrData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToP.o XpmRdFToP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrP.o XpmWrFFrP.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrDataFrI.o XpmCrDataFrI.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmCrIFrData.o XpmCrIFrData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmRdFToData.o XpmRdFToData.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XpmWrFFrData.o XpmWrFFrData.c ar rv libXpm.a data.o create.o misc.o rgb.o scan.o parse.o hashtable.o XpmCrBufFrI.o XpmCrDataFrP.o XpmCrPFrBuf.o XpmRdFToI.o XpmWrFFrI.o XpmCrBufFrP.o XpmCrIFrBuf.o XpmCrPFrData.o XpmRdFToP.o XpmWrFFrP.o XpmCrDataFrI.o XpmCrIFrData.o XpmRdFToData.o XpmWrFFrData.o ar: creating libXpm.a a - data.o a - create.o a - misc.o a - rgb.o a - scan.o a - parse.o a - hashtable.o a - XpmCrBufFrI.o a - XpmCrDataFrP.o a - XpmCrPFrBuf.o a - XpmRdFToI.o a - XpmWrFFrI.o a - XpmCrBufFrP.o a - XpmCrIFrBuf.o a - XpmCrPFrData.o a - XpmRdFToP.o a - XpmWrFFrP.o a - XpmCrDataFrI.o a - XpmCrIFrData.o a - XpmRdFToData.o a - XpmWrFFrData.o ranlib libXpm.a make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/Xpm' cd src/Xraw && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/Xraw' gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o 3d.o 3d.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AllWidgets.o AllWidgets.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Arrow.o Arrow.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSink.o AsciiSink.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiSrc.o AsciiSrc.c AsciiSrc.c: In function ‘MyStrncpy’: AsciiSrc.c:1181:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1181:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1181:38: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1181:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1185:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1185:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1185:38: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1185:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1192:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1192:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1192:38: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] AsciiSrc.c:1192:48: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o AsciiText.o AsciiText.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Box.o Box.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Clock.o Clock.c Clock.c:48:12: warning: conflicting types for built-in function ‘round’ [enabled by default] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Command.o Command.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o color.o color.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Container.o Container.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Dialog.o Dialog.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Form.o Form.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Frame.o Frame.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Grip.o Grip.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Label.o Label.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o List.o List.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Logo.o Logo.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o MenuButton.o MenuButton.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Paned.o Paned.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Panner.o Panner.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Porthole.o Porthole.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Repeater.o Repeater.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Scrollbar.o Scrollbar.c Scrollbar.c: In function ‘Release’: Scrollbar.c:1333:5: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o ScrolledTable.o ScrolledTable.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Separator.o Separator.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Simple.o Simple.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SimpleMenu.o SimpleMenu.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Sme.o Sme.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeBSB.o SmeBSB.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o SmeLine.o SmeLine.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o StripChart.o StripChart.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o table.o table.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Table2.o Table2.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Text.o Text.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSink.o TextSink.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextSrc.o TextSrc.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextAction.o TextAction.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextPop.o TextPop.c TextPop.c: In function ‘DoSearch’: TextPop.c:794:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] TextPop.c: In function ‘Replace’: TextPop.c:924:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o TextTr.o TextTr.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Toggle.o Toggle.c Toggle.c: In function ‘Notify’: Toggle.c:422:35: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Tree.o Tree.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Vendor.o Vendor.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o Viewport.o Viewport.c gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -o XawInit.o XawInit.c ar rv libXaw.a 3d.o AllWidgets.o Arrow.o AsciiSink.o AsciiSrc.o AsciiText.o Box.o Clock.o Command.o color.o Container.o Dialog.o Form.o Frame.o Grip.o Label.o List.o Logo.o MenuButton.o Paned.o Panner.o Porthole.o Repeater.o Scrollbar.o ScrolledTable.o Separator.o Simple.o SimpleMenu.o Sme.o SmeBSB.o SmeLine.o StripChart.o table.o Table2.o Text.o TextSink.o TextSrc.o TextAction.o TextPop.o TextTr.o Toggle.o Tree.o Vendor.o Viewport.o XawInit.o ar: creating libXaw.a a - 3d.o a - AllWidgets.o a - Arrow.o a - AsciiSink.o a - AsciiSrc.o a - AsciiText.o a - Box.o a - Clock.o a - Command.o a - color.o a - Container.o a - Dialog.o a - Form.o a - Frame.o a - Grip.o a - Label.o a - List.o a - Logo.o a - MenuButton.o a - Paned.o a - Panner.o a - Porthole.o a - Repeater.o a - Scrollbar.o a - ScrolledTable.o a - Separator.o a - Simple.o a - SimpleMenu.o a - Sme.o a - SmeBSB.o a - SmeLine.o a - StripChart.o a - table.o a - Table2.o a - Text.o a - TextSink.o a - TextSrc.o a - TextAction.o a - TextPop.o a - TextTr.o a - Toggle.o a - Tree.o a - Vendor.o a - Viewport.o a - XawInit.o ranlib libXaw.a make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/Xraw' cd src/leap && make install make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/leap' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o teLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o tLeap.o -lm gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xTank.o xTank.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xAction.o xAction.c xAction.c: In function ‘zActionTwistTorsions’: xAction.c:1112:41: warning: passing argument 1 of ‘BuildRotateAroundBondFromTo’ from incompatible pointer type [enabled by default] In file included from xAction.c:52:0: build.h:68:14: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o x3d.o x3d.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xBasics.o xBasics.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaLeapc.o xaLeapc.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaUnitEditor.o xaUnitEditor.c xaUnitEditor.c: In function ‘XAUEAddHydrogensAndBuildExternals’: xaUnitEditor.c:888:5: warning: passing argument 1 of ‘BuildInternalsForSimpleRings’ from incompatible pointer type [enabled by default] In file included from xaUnitEditor.c:76:0: build.h:75:14: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ xaUnitEditor.c: In function ‘XAUESelectedAtomsFlipChirality’: xaUnitEditor.c:1335:6: warning: passing argument 1 of ‘bBuildFlipChiralityFor’ from incompatible pointer type [enabled by default] In file included from xaUnitEditor.c:76:0: build.h:71:14: note: expected ‘CONTAINER’ but argument is of type ‘UNIT’ gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTable.o xaTable.c xaTable.c: In function ‘XATFindReturn’: xaTable.c:505:9: warning: ‘XKeycodeToKeysym’ is deprecated (declared at /usr/include/X11/Xlib.h:1695) [-Wdeprecated-declarations] gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomTable.o xaAtomTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o XrawRegistr.o XrawRegistr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaCommand.o xaCommand.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTools.o xaTools.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAtomParmTable.o xaAtomParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaBondParmTable.o xaBondParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaAngleParmTable.o xaAngleParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaParmEditor.o xaParmEditor.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaTorsionParmTable.o xaTorsionParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaImproperParmTable.o xaImproperParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o xaHBondParmTable.o xaHBondParmTable.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o xaLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o collection.o container.o internal.o list.o loop.o molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o mol2File.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o xTank.o xAction.o x3d.o xBasics.o xaLeapc.o xaUnitEditor.o xaTable.o xaAtomTable.o XrawRegistr.o xaCommand.o xaTools.o xaAtomParmTable.o xaBondParmTable.o xaAngleParmTable.o xaParmEditor.o xaTorsionParmTable.o xaImproperParmTable.o xaHBondParmTable.o ../Xraw/libXaw.a ../Wc/libWcLeap.a ../Xpm/libXpm.a ../Xmu/libXmu.a -L/usr/X11R6/lib64 -L/usr/X11R6/lib -lXt -lXext -lSM -lICE -lX11 -lXau -lXdmcp -lm -lpthread m4 xaLeap.rm4 > XaLeap_wcl mv teLeap xaLeap /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin mv XaLeap_wcl /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap/src/leap' Copying shell script cp xleap /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/xleap chmod +x /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/xleap Copying pixmaps mkdir /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/pixmap cd pixmap; /bin/cp * /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat/pixmap Finished with the install of LEaP make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap' make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/leap' (cd gleap && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap' cd freelib && make make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/freelib' cd readline && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/freelib/readline' gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o bind.o bind.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o callback.o callback.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o compat.o compat.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o complete.o complete.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o display.o display.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o funmap.o funmap.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histexpand.o histexpand.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histfile.o histfile.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o history.o history.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o histsearch.o histsearch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o input.o input.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o isearch.o isearch.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o keymaps.o keymaps.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o kill.o kill.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o macro.o macro.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o mbutil.o mbutil.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o misc.o misc.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o nls.o nls.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o parens.o parens.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o readline.o readline.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o rltty.o rltty.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o savestring.o savestring.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o search.o search.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o shell.o shell.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o signals.o signals.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o termcap.o termcap.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o terminal.o terminal.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o text.o text.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o tilde.o tilde.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o tparam.o tparam.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o undo.o undo.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o util.o util.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o version.o version.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o vi_mode.o vi_mode.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHAVE_CONFIG_H -I. -o xmalloc.o xmalloc.c rm -f libreadline.a ar cqs libreadline.a bind.o callback.o compat.o complete.o display.o funmap.o histexpand.o histfile.o history.o histsearch.o input.o isearch.o keymaps.o kill.o macro.o mbutil.o misc.o nls.o parens.o readline.o rltty.o savestring.o search.o shell.o signals.o termcap.o terminal.o text.o tilde.o tparam.o undo.o util.o version.o vi_mode.o xmalloc.o make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/freelib/readline' make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/freelib' cd mortsrc && make make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc' cd common && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/common' g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o numvec.o numvec.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o matrix.o matrix.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o pertab.o pertab.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o fortran.o fortran.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o stralgo.o stralgo.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o crdalgo.o crdalgo.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o funstack.o funstack.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o geometry.o geometry.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../../freelib -o hashcode.o hashcode.cpp rm -f libcommon.a ar cqs libcommon.a numvec.o matrix.o pertab.o fortran.o stralgo.o crdalgo.o funstack.o geometry.o hashcode.o make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/common' cd object && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/object' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o angl.o angl.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o dihe.o dihe.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o impr.o impr.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o atmv.o atmv.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o rela.o rela.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o data.o data.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o comp.o comp.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o root.o root.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o mole.o mole.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o morf.o morf.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/object' cd objfun && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/objfun' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o wrapper.o wrapper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o atomfun.o atomfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o bondfun.o bondfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o fixbond.o fixbond.cpp fixbond.cpp:471:9: warning: unused parameter ‘atms’ [-Wunused-parameter] g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o geomfun.o geomfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o hydrfun.o hydrfun.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o merge.o merge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -o parmfun.o parmfun.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/objfun' cd ambfmt && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/ambfmt' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o ambfrc-amoeba.o ambfrc-amoeba.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o amboff.o amboff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o chain.o chain.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o energee.o energee.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o exclude.o exclude.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o extent.o extent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o les.o les.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o parm.o parm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o parmset.o parmset.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o prep.o prep.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o prmtop-amoeba.o prmtop-amoeba.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o prmtop.o prmtop.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/ambfmt' cd atmask && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/atmask' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o condition.o condition.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o dist.o dist.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o logic.o logic.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mask.o mask.cpp mask.cpp: In constructor ‘mort::atmask::node_i::node_i(bool)’: mask.cpp:43:17: warning: the address of ‘std::vector* insts()’ will never be NULL [-Waddress] g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o paren.o paren.cpp paren.cpp:14:23: warning: unused parameter ‘mol’ [-Wunused-parameter] g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o resd.o resd.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/atmask' cd capbox && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/capbox' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o addions.o addions.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o octree.o octree.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o shaper.o shaper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o solute.o solute.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o solvate.o solvate.cpp solvate.cpp: In function ‘void mort::solvate(mort::solute_i&, const mort::molecule_t&, const mort::region_i&)’: solvate.cpp:68:16: warning: unused variable ‘svt_maxrad’ [-Wunused-variable] g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o solvent.o solvent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o region.o region.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/capbox' cd enefrc && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/enefrc' g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o bonding.o bonding.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o ctrlparm.o ctrlparm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o nonbond-lst.o nonbond-lst.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o nonbond-egb.o nonbond-egb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I.. -I../../freelib -I. -o nonbond-pbc.o nonbond-pbc.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/enefrc' cd guilib && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/guilib' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o command.o command.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o console.o console.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o control.o control.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o grammar.o grammar.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o leaplog.o leaplog.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mainwin.o mainwin.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/guilib' cd format && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/format' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mol.o mol.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mdb.o mdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o ext.o ext.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o frc.o frc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o top.o top.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o sdf.o sdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o xyz.o xyz.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/format' cd smarts && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/smarts' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o parse.o parse.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o reader.o reader.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o status.o status.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o finder.o finder.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o atomexpr.o atomexpr.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o tyrule.o tyrule.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o ring.o ring.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o subst.o subst.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o smarts.o smarts.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/smarts' cd tripos && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/tripos' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o head.o head.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o sect.o sect.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mol2.o mol2.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/tripos' cd pdbent && make make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/pdbent' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o atom.o atom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o resd.o resd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o mdlize.o mdlize.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o second.o second.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o pdbent.o pdbent.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I.. -I../../freelib -o namemap.o namemap.cpp make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc/pdbent' rm -f libmort.a ar cqs libmort.a ambfmt/ambfrc-amoeba.o ambfmt/amboff.o ambfmt/chain.o ambfmt/energee.o ambfmt/exclude.o ambfmt/extent.o ambfmt/les.o ambfmt/parm.o ambfmt/parmset.o ambfmt/prep.o ambfmt/prmtop-amoeba.o ambfmt/prmtop.o atmask/atom.o atmask/condition.o atmask/dist.o atmask/logic.o atmask/mask.o atmask/paren.o atmask/resd.o capbox/addions.o capbox/octree.o capbox/shaper.o capbox/solute.o capbox/solvate.o capbox/solvent.o capbox/region.o common/numvec.o common/matrix.o common/pertab.o common/fortran.o common/stralgo.o common/crdalgo.o common/funstack.o common/geometry.o common/hashcode.o enefrc/bonding.o enefrc/ctrlparm.o enefrc/nonbond-lst.o enefrc/nonbond-egb.o enefrc/nonbond-pbc.o format/mol.o format/mdb.o format/ext.o format/frc.o format/top.o format/sdf.o format/xyz.o guilib/command.o guilib/console.o guilib/control.o guilib/grammar.o guilib/leaplog.o guilib/mainwin.o guilib/leaplog.o object/atom.o object/angl.o object/bond.o object/dihe.o object/impr.o object/resd.o object/atmv.o object/rela.o object/data.o object/comp.o object/root.o object/mole.o object/morf.o objfun/wrapper.o objfun/atomfun.o objfun/bondfun.o objfun/fixbond.o objfun/geomfun.o objfun/hydrfun.o objfun/merge.o objfun/parmfun.o pdbent/atom.o pdbent/bond.o pdbent/resd.o pdbent/mdlize.o pdbent/second.o pdbent/pdbent.o pdbent/namemap.o smarts/parse.o smarts/reader.o smarts/status.o smarts/finder.o smarts/atomexpr.o smarts/tyrule.o smarts/ring.o smarts/subst.o smarts/smarts.o tripos/atom.o tripos/bond.o tripos/head.o tripos/resd.o tripos/sect.o tripos/mol2.o make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/mortsrc' cd plugins && make make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/plugins' g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o add.o add.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o addmap.o addmap.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o addions.o addions.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o bond.o bond.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o center.o center.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o charge.o charge.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o check.o check.cpp check.cpp: In member function ‘virtual mort::command_ptr amber::check_command::clone(const std::vector >&) const’: check.cpp:294:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o copy.o copy.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o create.o create.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o desc.o desc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o delete.o delete.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o energy.o energy.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o geom.o geom.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o help.o help.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o impose.o impose.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o list.o list.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadcrd.o loadcrd.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadfrc.o loadfrc.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadmol2.o loadmol2.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadoff.o loadoff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadpdb.o loadpdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadprep.o loadprep.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o loadsdf.o loadsdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o measure.o measure.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o merge.o merge.cpp merge.cpp:103:15: warning: unused parameter ‘prev’ [-Wunused-parameter] g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o moloper.o moloper.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savemol2.o savemol2.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o saveoff.o saveoff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savepdb.o savepdb.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o saveprm.o saveprm.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o savesdf.o savesdf.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o set.o set.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o shell.o shell.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o solvate.o solvate.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o source.o source.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o transform.o transform.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I. -I../mortsrc -I../mortsrc/guilib -I../freelib -o zmatrix.o zmatrix.cpp rm -f libplugins.a ar cqs libplugins.a add.o addmap.o addions.o bond.o center.o charge.o check.o copy.o create.o desc.o delete.o energy.o geom.o help.o impose.o list.o loadcrd.o loadfrc.o loadmol2.o loadoff.o loadpdb.o loadprep.o loadsdf.o measure.o merge.o moloper.o savemol2.o saveoff.o savepdb.o saveprm.o savesdf.o set.o shell.o solvate.o source.o transform.o zmatrix.o make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/plugins' cd leapsrc && make install make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/leapsrc' g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strmain.o strmain.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strbuff.o strbuff.cpp g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o plugins.o plugins.cpp g++ -static-libgcc -o sleap strmain.o strbuff.o plugins.o ../freelib/readline/libreadline.a -lm ../plugins/libplugins.a ../mortsrc/libmort.a mv sleap /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap/leapsrc' make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/gleap' (cd rism && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/rism' cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism_report_c.f > _rism_report_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism_report_c.o _rism_report_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ safemem.f > _safemem.f gfortran -c -O3 -mtune=generic -ffree-form -o safemem.o _safemem.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ constants.f > _constants.f gfortran -c -O3 -mtune=generic -ffree-form -o constants.o _constants.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ quaternion.f > _quaternion.f gfortran -c -O3 -mtune=generic -ffree-form -o quaternion.o _quaternion.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism_util.f > _rism_util.f gfortran -c -O3 -mtune=generic -ffree-form -o rism_util.o _rism_util.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ solvmdl_c.f > _solvmdl_c.f gfortran -c -O0 -ffree-form -o solvmdl_c.o _solvmdl_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d_potential_c.f > _rism1d_potential_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d_potential_c.o _rism1d_potential_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d_kh_c.f > _rism1d_kh_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d_kh_c.o _rism1d_kh_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d_hnc_c.f > _rism1d_hnc_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d_hnc_c.o _rism1d_hnc_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d_py_c.f > _rism1d_py_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d_py_c.o _rism1d_py_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d_mv0_c.f > _rism1d_mv0_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d_mv0_c.o _rism1d_mv0_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d_psen_c.f > _rism1d_psen_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d_psen_c.o _rism1d_psen_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d_closure_c.f > _rism1d_closure_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d_closure_c.o _rism1d_closure_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_orig_c.f > _mdiis_orig_c.f gfortran -c -O3 -mtune=generic -ffree-form -o mdiis_orig_c.o _mdiis_orig_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_blas_c.f > _mdiis_blas_c.f gfortran -c -O3 -mtune=generic -ffree-form -o mdiis_blas_c.o _mdiis_blas_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_blas2_c.f > _mdiis_blas2_c.f gfortran -c -O3 -mtune=generic -ffree-form -o mdiis_blas2_c.o _mdiis_blas2_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ mdiis_c.f > _mdiis_c.f gfortran -c -O3 -mtune=generic -ffree-form -o mdiis_c.o _mdiis_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d_c.f > _rism1d_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d_c.o _rism1d_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_grid_c.f > _rism3d_grid_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_grid_c.o _rism3d_grid_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_solu_c.f > _rism3d_solu_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_solu_c.o _rism3d_solu_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_solv_c.f > _rism3d_solv_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_solv_c.o _rism3d_solv_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_potential_c.f > _rism3d_potential_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_potential_c.o _rism3d_potential_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_kh_c.f > _rism3d_kh_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_kh_c.o _rism3d_kh_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_hnc_c.f > _rism3d_hnc_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_hnc_c.o _rism3d_hnc_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_psen_c.f > _rism3d_psen_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_psen_c.o _rism3d_psen_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_closure_c.f > _rism3d_closure_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_closure_c.o _rism3d_closure_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism_fft.f > _rism_fft.f gfortran -c -O3 -mtune=generic -ffree-form -o rism_fft.o _rism_fft.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_csv.f > _rism3d_csv.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_csv.o _rism3d_csv.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_c.f > _rism3d_c.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_c.o _rism3d_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism3d_opendx.f > _rism3d_opendx.f gfortran -c -O3 -mtune=generic -ffree-form -o rism3d_opendx.o _rism3d_opendx.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ pubfft.f > _pubfft.f gfortran -c -O0 -ffree-form -o pubfft.o _pubfft.f _pubfft.f:1646.29: CALL RFFTI1 (N,WSAVE(N+1),WSAVE(2*N+1)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) _pubfft.f:1724.46: CALL SINT1(N,X,WSAVE,WSAVE(IW1),WSAVE(IW2),WSAVE(IW3)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) _pubfft.f:142.37: call cfftb1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) _pubfft.f:231.37: call cfftf1 (n,c,wsave,wsave(iw1),wsave(iw2)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) _pubfft.f:345.29: call cffti1 (n,wsave(iw1),wsave(iw2)) 1 Warning: Type mismatch in argument 'ifac' at (1); passed REAL(8) to INTEGER(4) _pubfft.f:1148.41: if ( isign == -1) call cfftf(n1,work,table(1,1)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1149.40: if ( isign == 1) call cfftb(n1,work,table(1,1)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1163.41: if ( isign == -1) call cfftf(n2,work,table(1,2)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1164.40: if ( isign == 1) call cfftb(n2,work,table(1,2)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1178.41: if ( isign == -1) call cfftf(n3,work,table(1,3)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) _pubfft.f:1179.40: if ( isign == 1) call cfftb(n3,work,table(1,3)) 1 Warning: Type mismatch in argument 'c' at (1); passed COMPLEX(8) to REAL(8) cpp -traditional -P -DBINTRAJ rism_nxtsec.f > _rism_nxtsec.f gfortran -c -o rism_nxtsec.o _rism_nxtsec.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rdxvv.f > _rdxvv.f gfortran -c -O0 -ffree-form -o rdxvv.o _rdxvv.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ fce_c.f > _fce_c.f gfortran -c -O3 -mtune=generic -ffree-form -o fce_c.o _fce_c.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ erfcfun.f > _erfcfun.f gfortran -c -O3 -mtune=generic -ffree-form -o erfcfun.o _erfcfun.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ blend.f > _blend.f gfortran -c -O3 -mtune=generic -ffree-form -o blend.o _blend.f cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ timer_c.f > _timer_c.f gfortran -c -O0 -ffree-form -o timer_c.o _timer_c.f if [ "-L/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib -ldrfftw -ldfftw" = '-lfftw2xf_gnu' ]; then\ cd /interfaces/fftw2xf && make lib \ compiler=gnu PRECISION=MKL_DOUBLE \ INSTALL_DIR=/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib; \ else \ cd ../fftw-2.1.5 && make install; \ fi make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' Making install in fftw make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_1.lo -MD -MP -MF ".deps/fn_1.Tpo" \ -c -o fn_1.lo `test -f 'fn_1.c' || echo './'`fn_1.c; \ then mv ".deps/fn_1.Tpo" ".deps/fn_1.Plo"; \ else rm -f ".deps/fn_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_1.lo -MD -MP -MF .deps/fn_1.Tpo -c fn_1.c -o fn_1.o echo timestamp > fn_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_2.lo -MD -MP -MF ".deps/fn_2.Tpo" \ -c -o fn_2.lo `test -f 'fn_2.c' || echo './'`fn_2.c; \ then mv ".deps/fn_2.Tpo" ".deps/fn_2.Plo"; \ else rm -f ".deps/fn_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_2.lo -MD -MP -MF .deps/fn_2.Tpo -c fn_2.c -o fn_2.o echo timestamp > fn_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_3.lo -MD -MP -MF ".deps/fn_3.Tpo" \ -c -o fn_3.lo `test -f 'fn_3.c' || echo './'`fn_3.c; \ then mv ".deps/fn_3.Tpo" ".deps/fn_3.Plo"; \ else rm -f ".deps/fn_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_3.lo -MD -MP -MF .deps/fn_3.Tpo -c fn_3.c -o fn_3.o echo timestamp > fn_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_4.lo -MD -MP -MF ".deps/fn_4.Tpo" \ -c -o fn_4.lo `test -f 'fn_4.c' || echo './'`fn_4.c; \ then mv ".deps/fn_4.Tpo" ".deps/fn_4.Plo"; \ else rm -f ".deps/fn_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_4.lo -MD -MP -MF .deps/fn_4.Tpo -c fn_4.c -o fn_4.o echo timestamp > fn_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_5.lo -MD -MP -MF ".deps/fn_5.Tpo" \ -c -o fn_5.lo `test -f 'fn_5.c' || echo './'`fn_5.c; \ then mv ".deps/fn_5.Tpo" ".deps/fn_5.Plo"; \ else rm -f ".deps/fn_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_5.lo -MD -MP -MF .deps/fn_5.Tpo -c fn_5.c -o fn_5.o echo timestamp > fn_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_6.lo -MD -MP -MF ".deps/fn_6.Tpo" \ -c -o fn_6.lo `test -f 'fn_6.c' || echo './'`fn_6.c; \ then mv ".deps/fn_6.Tpo" ".deps/fn_6.Plo"; \ else rm -f ".deps/fn_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_6.lo -MD -MP -MF .deps/fn_6.Tpo -c fn_6.c -o fn_6.o echo timestamp > fn_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_7.lo -MD -MP -MF ".deps/fn_7.Tpo" \ -c -o fn_7.lo `test -f 'fn_7.c' || echo './'`fn_7.c; \ then mv ".deps/fn_7.Tpo" ".deps/fn_7.Plo"; \ else rm -f ".deps/fn_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_7.lo -MD -MP -MF .deps/fn_7.Tpo -c fn_7.c -o fn_7.o echo timestamp > fn_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_8.lo -MD -MP -MF ".deps/fn_8.Tpo" \ -c -o fn_8.lo `test -f 'fn_8.c' || echo './'`fn_8.c; \ then mv ".deps/fn_8.Tpo" ".deps/fn_8.Plo"; \ else rm -f ".deps/fn_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_8.lo -MD -MP -MF .deps/fn_8.Tpo -c fn_8.c -o fn_8.o echo timestamp > fn_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_9.lo -MD -MP -MF ".deps/fn_9.Tpo" \ -c -o fn_9.lo `test -f 'fn_9.c' || echo './'`fn_9.c; \ then mv ".deps/fn_9.Tpo" ".deps/fn_9.Plo"; \ else rm -f ".deps/fn_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_9.lo -MD -MP -MF .deps/fn_9.Tpo -c fn_9.c -o fn_9.o echo timestamp > fn_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_10.lo -MD -MP -MF ".deps/fn_10.Tpo" \ -c -o fn_10.lo `test -f 'fn_10.c' || echo './'`fn_10.c; \ then mv ".deps/fn_10.Tpo" ".deps/fn_10.Plo"; \ else rm -f ".deps/fn_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_10.lo -MD -MP -MF .deps/fn_10.Tpo -c fn_10.c -o fn_10.o echo timestamp > fn_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_11.lo -MD -MP -MF ".deps/fn_11.Tpo" \ -c -o fn_11.lo `test -f 'fn_11.c' || echo './'`fn_11.c; \ then mv ".deps/fn_11.Tpo" ".deps/fn_11.Plo"; \ else rm -f ".deps/fn_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_11.lo -MD -MP -MF .deps/fn_11.Tpo -c fn_11.c -o fn_11.o echo timestamp > fn_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_12.lo -MD -MP -MF ".deps/fn_12.Tpo" \ -c -o fn_12.lo `test -f 'fn_12.c' || echo './'`fn_12.c; \ then mv ".deps/fn_12.Tpo" ".deps/fn_12.Plo"; \ else rm -f ".deps/fn_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_12.lo -MD -MP -MF .deps/fn_12.Tpo -c fn_12.c -o fn_12.o echo timestamp > fn_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_13.lo -MD -MP -MF ".deps/fn_13.Tpo" \ -c -o fn_13.lo `test -f 'fn_13.c' || echo './'`fn_13.c; \ then mv ".deps/fn_13.Tpo" ".deps/fn_13.Plo"; \ else rm -f ".deps/fn_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_13.lo -MD -MP -MF .deps/fn_13.Tpo -c fn_13.c -o fn_13.o echo timestamp > fn_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_14.lo -MD -MP -MF ".deps/fn_14.Tpo" \ -c -o fn_14.lo `test -f 'fn_14.c' || echo './'`fn_14.c; \ then mv ".deps/fn_14.Tpo" ".deps/fn_14.Plo"; \ else rm -f ".deps/fn_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_14.lo -MD -MP -MF .deps/fn_14.Tpo -c fn_14.c -o fn_14.o echo timestamp > fn_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_15.lo -MD -MP -MF ".deps/fn_15.Tpo" \ -c -o fn_15.lo `test -f 'fn_15.c' || echo './'`fn_15.c; \ then mv ".deps/fn_15.Tpo" ".deps/fn_15.Plo"; \ else rm -f ".deps/fn_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_15.lo -MD -MP -MF .deps/fn_15.Tpo -c fn_15.c -o fn_15.o echo timestamp > fn_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_16.lo -MD -MP -MF ".deps/fn_16.Tpo" \ -c -o fn_16.lo `test -f 'fn_16.c' || echo './'`fn_16.c; \ then mv ".deps/fn_16.Tpo" ".deps/fn_16.Plo"; \ else rm -f ".deps/fn_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_16.lo -MD -MP -MF .deps/fn_16.Tpo -c fn_16.c -o fn_16.o echo timestamp > fn_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_32.lo -MD -MP -MF ".deps/fn_32.Tpo" \ -c -o fn_32.lo `test -f 'fn_32.c' || echo './'`fn_32.c; \ then mv ".deps/fn_32.Tpo" ".deps/fn_32.Plo"; \ else rm -f ".deps/fn_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_32.lo -MD -MP -MF .deps/fn_32.Tpo -c fn_32.c -o fn_32.o echo timestamp > fn_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_64.lo -MD -MP -MF ".deps/fn_64.Tpo" \ -c -o fn_64.lo `test -f 'fn_64.c' || echo './'`fn_64.c; \ then mv ".deps/fn_64.Tpo" ".deps/fn_64.Plo"; \ else rm -f ".deps/fn_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fn_64.lo -MD -MP -MF .deps/fn_64.Tpo -c fn_64.c -o fn_64.o echo timestamp > fn_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_2.lo -MD -MP -MF ".deps/ftw_2.Tpo" \ -c -o ftw_2.lo `test -f 'ftw_2.c' || echo './'`ftw_2.c; \ then mv ".deps/ftw_2.Tpo" ".deps/ftw_2.Plo"; \ else rm -f ".deps/ftw_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_2.lo -MD -MP -MF .deps/ftw_2.Tpo -c ftw_2.c -o ftw_2.o echo timestamp > ftw_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_3.lo -MD -MP -MF ".deps/ftw_3.Tpo" \ -c -o ftw_3.lo `test -f 'ftw_3.c' || echo './'`ftw_3.c; \ then mv ".deps/ftw_3.Tpo" ".deps/ftw_3.Plo"; \ else rm -f ".deps/ftw_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_3.lo -MD -MP -MF .deps/ftw_3.Tpo -c ftw_3.c -o ftw_3.o echo timestamp > ftw_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_4.lo -MD -MP -MF ".deps/ftw_4.Tpo" \ -c -o ftw_4.lo `test -f 'ftw_4.c' || echo './'`ftw_4.c; \ then mv ".deps/ftw_4.Tpo" ".deps/ftw_4.Plo"; \ else rm -f ".deps/ftw_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_4.lo -MD -MP -MF .deps/ftw_4.Tpo -c ftw_4.c -o ftw_4.o echo timestamp > ftw_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_5.lo -MD -MP -MF ".deps/ftw_5.Tpo" \ -c -o ftw_5.lo `test -f 'ftw_5.c' || echo './'`ftw_5.c; \ then mv ".deps/ftw_5.Tpo" ".deps/ftw_5.Plo"; \ else rm -f ".deps/ftw_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_5.lo -MD -MP -MF .deps/ftw_5.Tpo -c ftw_5.c -o ftw_5.o echo timestamp > ftw_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_6.lo -MD -MP -MF ".deps/ftw_6.Tpo" \ -c -o ftw_6.lo `test -f 'ftw_6.c' || echo './'`ftw_6.c; \ then mv ".deps/ftw_6.Tpo" ".deps/ftw_6.Plo"; \ else rm -f ".deps/ftw_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_6.lo -MD -MP -MF .deps/ftw_6.Tpo -c ftw_6.c -o ftw_6.o echo timestamp > ftw_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_7.lo -MD -MP -MF ".deps/ftw_7.Tpo" \ -c -o ftw_7.lo `test -f 'ftw_7.c' || echo './'`ftw_7.c; \ then mv ".deps/ftw_7.Tpo" ".deps/ftw_7.Plo"; \ else rm -f ".deps/ftw_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_7.lo -MD -MP -MF .deps/ftw_7.Tpo -c ftw_7.c -o ftw_7.o echo timestamp > ftw_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_8.lo -MD -MP -MF ".deps/ftw_8.Tpo" \ -c -o ftw_8.lo `test -f 'ftw_8.c' || echo './'`ftw_8.c; \ then mv ".deps/ftw_8.Tpo" ".deps/ftw_8.Plo"; \ else rm -f ".deps/ftw_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_8.lo -MD -MP -MF .deps/ftw_8.Tpo -c ftw_8.c -o ftw_8.o echo timestamp > ftw_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_9.lo -MD -MP -MF ".deps/ftw_9.Tpo" \ -c -o ftw_9.lo `test -f 'ftw_9.c' || echo './'`ftw_9.c; \ then mv ".deps/ftw_9.Tpo" ".deps/ftw_9.Plo"; \ else rm -f ".deps/ftw_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_9.lo -MD -MP -MF .deps/ftw_9.Tpo -c ftw_9.c -o ftw_9.o echo timestamp > ftw_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_10.lo -MD -MP -MF ".deps/ftw_10.Tpo" \ -c -o ftw_10.lo `test -f 'ftw_10.c' || echo './'`ftw_10.c; \ then mv ".deps/ftw_10.Tpo" ".deps/ftw_10.Plo"; \ else rm -f ".deps/ftw_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_10.lo -MD -MP -MF .deps/ftw_10.Tpo -c ftw_10.c -o ftw_10.o echo timestamp > ftw_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_16.lo -MD -MP -MF ".deps/ftw_16.Tpo" \ -c -o ftw_16.lo `test -f 'ftw_16.c' || echo './'`ftw_16.c; \ then mv ".deps/ftw_16.Tpo" ".deps/ftw_16.Plo"; \ else rm -f ".deps/ftw_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_16.lo -MD -MP -MF .deps/ftw_16.Tpo -c ftw_16.c -o ftw_16.o echo timestamp > ftw_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_32.lo -MD -MP -MF ".deps/ftw_32.Tpo" \ -c -o ftw_32.lo `test -f 'ftw_32.c' || echo './'`ftw_32.c; \ then mv ".deps/ftw_32.Tpo" ".deps/ftw_32.Plo"; \ else rm -f ".deps/ftw_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_32.lo -MD -MP -MF .deps/ftw_32.Tpo -c ftw_32.c -o ftw_32.o echo timestamp > ftw_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_64.lo -MD -MP -MF ".deps/ftw_64.Tpo" \ -c -o ftw_64.lo `test -f 'ftw_64.c' || echo './'`ftw_64.c; \ then mv ".deps/ftw_64.Tpo" ".deps/ftw_64.Plo"; \ else rm -f ".deps/ftw_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftw_64.lo -MD -MP -MF .deps/ftw_64.Tpo -c ftw_64.c -o ftw_64.o echo timestamp > ftw_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_1.lo -MD -MP -MF ".deps/fni_1.Tpo" \ -c -o fni_1.lo `test -f 'fni_1.c' || echo './'`fni_1.c; \ then mv ".deps/fni_1.Tpo" ".deps/fni_1.Plo"; \ else rm -f ".deps/fni_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_1.lo -MD -MP -MF .deps/fni_1.Tpo -c fni_1.c -o fni_1.o echo timestamp > fni_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_2.lo -MD -MP -MF ".deps/fni_2.Tpo" \ -c -o fni_2.lo `test -f 'fni_2.c' || echo './'`fni_2.c; \ then mv ".deps/fni_2.Tpo" ".deps/fni_2.Plo"; \ else rm -f ".deps/fni_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_2.lo -MD -MP -MF .deps/fni_2.Tpo -c fni_2.c -o fni_2.o echo timestamp > fni_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_3.lo -MD -MP -MF ".deps/fni_3.Tpo" \ -c -o fni_3.lo `test -f 'fni_3.c' || echo './'`fni_3.c; \ then mv ".deps/fni_3.Tpo" ".deps/fni_3.Plo"; \ else rm -f ".deps/fni_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_3.lo -MD -MP -MF .deps/fni_3.Tpo -c fni_3.c -o fni_3.o echo timestamp > fni_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_4.lo -MD -MP -MF ".deps/fni_4.Tpo" \ -c -o fni_4.lo `test -f 'fni_4.c' || echo './'`fni_4.c; \ then mv ".deps/fni_4.Tpo" ".deps/fni_4.Plo"; \ else rm -f ".deps/fni_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_4.lo -MD -MP -MF .deps/fni_4.Tpo -c fni_4.c -o fni_4.o echo timestamp > fni_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_5.lo -MD -MP -MF ".deps/fni_5.Tpo" \ -c -o fni_5.lo `test -f 'fni_5.c' || echo './'`fni_5.c; \ then mv ".deps/fni_5.Tpo" ".deps/fni_5.Plo"; \ else rm -f ".deps/fni_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_5.lo -MD -MP -MF .deps/fni_5.Tpo -c fni_5.c -o fni_5.o echo timestamp > fni_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_6.lo -MD -MP -MF ".deps/fni_6.Tpo" \ -c -o fni_6.lo `test -f 'fni_6.c' || echo './'`fni_6.c; \ then mv ".deps/fni_6.Tpo" ".deps/fni_6.Plo"; \ else rm -f ".deps/fni_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_6.lo -MD -MP -MF .deps/fni_6.Tpo -c fni_6.c -o fni_6.o echo timestamp > fni_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_7.lo -MD -MP -MF ".deps/fni_7.Tpo" \ -c -o fni_7.lo `test -f 'fni_7.c' || echo './'`fni_7.c; \ then mv ".deps/fni_7.Tpo" ".deps/fni_7.Plo"; \ else rm -f ".deps/fni_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_7.lo -MD -MP -MF .deps/fni_7.Tpo -c fni_7.c -o fni_7.o echo timestamp > fni_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_8.lo -MD -MP -MF ".deps/fni_8.Tpo" \ -c -o fni_8.lo `test -f 'fni_8.c' || echo './'`fni_8.c; \ then mv ".deps/fni_8.Tpo" ".deps/fni_8.Plo"; \ else rm -f ".deps/fni_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_8.lo -MD -MP -MF .deps/fni_8.Tpo -c fni_8.c -o fni_8.o echo timestamp > fni_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_9.lo -MD -MP -MF ".deps/fni_9.Tpo" \ -c -o fni_9.lo `test -f 'fni_9.c' || echo './'`fni_9.c; \ then mv ".deps/fni_9.Tpo" ".deps/fni_9.Plo"; \ else rm -f ".deps/fni_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_9.lo -MD -MP -MF .deps/fni_9.Tpo -c fni_9.c -o fni_9.o echo timestamp > fni_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_10.lo -MD -MP -MF ".deps/fni_10.Tpo" \ -c -o fni_10.lo `test -f 'fni_10.c' || echo './'`fni_10.c; \ then mv ".deps/fni_10.Tpo" ".deps/fni_10.Plo"; \ else rm -f ".deps/fni_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_10.lo -MD -MP -MF .deps/fni_10.Tpo -c fni_10.c -o fni_10.o echo timestamp > fni_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_11.lo -MD -MP -MF ".deps/fni_11.Tpo" \ -c -o fni_11.lo `test -f 'fni_11.c' || echo './'`fni_11.c; \ then mv ".deps/fni_11.Tpo" ".deps/fni_11.Plo"; \ else rm -f ".deps/fni_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_11.lo -MD -MP -MF .deps/fni_11.Tpo -c fni_11.c -o fni_11.o echo timestamp > fni_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_12.lo -MD -MP -MF ".deps/fni_12.Tpo" \ -c -o fni_12.lo `test -f 'fni_12.c' || echo './'`fni_12.c; \ then mv ".deps/fni_12.Tpo" ".deps/fni_12.Plo"; \ else rm -f ".deps/fni_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_12.lo -MD -MP -MF .deps/fni_12.Tpo -c fni_12.c -o fni_12.o echo timestamp > fni_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_13.lo -MD -MP -MF ".deps/fni_13.Tpo" \ -c -o fni_13.lo `test -f 'fni_13.c' || echo './'`fni_13.c; \ then mv ".deps/fni_13.Tpo" ".deps/fni_13.Plo"; \ else rm -f ".deps/fni_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_13.lo -MD -MP -MF .deps/fni_13.Tpo -c fni_13.c -o fni_13.o echo timestamp > fni_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_14.lo -MD -MP -MF ".deps/fni_14.Tpo" \ -c -o fni_14.lo `test -f 'fni_14.c' || echo './'`fni_14.c; \ then mv ".deps/fni_14.Tpo" ".deps/fni_14.Plo"; \ else rm -f ".deps/fni_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_14.lo -MD -MP -MF .deps/fni_14.Tpo -c fni_14.c -o fni_14.o echo timestamp > fni_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_15.lo -MD -MP -MF ".deps/fni_15.Tpo" \ -c -o fni_15.lo `test -f 'fni_15.c' || echo './'`fni_15.c; \ then mv ".deps/fni_15.Tpo" ".deps/fni_15.Plo"; \ else rm -f ".deps/fni_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_15.lo -MD -MP -MF .deps/fni_15.Tpo -c fni_15.c -o fni_15.o echo timestamp > fni_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_16.lo -MD -MP -MF ".deps/fni_16.Tpo" \ -c -o fni_16.lo `test -f 'fni_16.c' || echo './'`fni_16.c; \ then mv ".deps/fni_16.Tpo" ".deps/fni_16.Plo"; \ else rm -f ".deps/fni_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_16.lo -MD -MP -MF .deps/fni_16.Tpo -c fni_16.c -o fni_16.o echo timestamp > fni_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_32.lo -MD -MP -MF ".deps/fni_32.Tpo" \ -c -o fni_32.lo `test -f 'fni_32.c' || echo './'`fni_32.c; \ then mv ".deps/fni_32.Tpo" ".deps/fni_32.Plo"; \ else rm -f ".deps/fni_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_32.lo -MD -MP -MF .deps/fni_32.Tpo -c fni_32.c -o fni_32.o echo timestamp > fni_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_64.lo -MD -MP -MF ".deps/fni_64.Tpo" \ -c -o fni_64.lo `test -f 'fni_64.c' || echo './'`fni_64.c; \ then mv ".deps/fni_64.Tpo" ".deps/fni_64.Plo"; \ else rm -f ".deps/fni_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fni_64.lo -MD -MP -MF .deps/fni_64.Tpo -c fni_64.c -o fni_64.o echo timestamp > fni_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_2.lo -MD -MP -MF ".deps/ftwi_2.Tpo" \ -c -o ftwi_2.lo `test -f 'ftwi_2.c' || echo './'`ftwi_2.c; \ then mv ".deps/ftwi_2.Tpo" ".deps/ftwi_2.Plo"; \ else rm -f ".deps/ftwi_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_2.lo -MD -MP -MF .deps/ftwi_2.Tpo -c ftwi_2.c -o ftwi_2.o echo timestamp > ftwi_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_3.lo -MD -MP -MF ".deps/ftwi_3.Tpo" \ -c -o ftwi_3.lo `test -f 'ftwi_3.c' || echo './'`ftwi_3.c; \ then mv ".deps/ftwi_3.Tpo" ".deps/ftwi_3.Plo"; \ else rm -f ".deps/ftwi_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_3.lo -MD -MP -MF .deps/ftwi_3.Tpo -c ftwi_3.c -o ftwi_3.o echo timestamp > ftwi_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_4.lo -MD -MP -MF ".deps/ftwi_4.Tpo" \ -c -o ftwi_4.lo `test -f 'ftwi_4.c' || echo './'`ftwi_4.c; \ then mv ".deps/ftwi_4.Tpo" ".deps/ftwi_4.Plo"; \ else rm -f ".deps/ftwi_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_4.lo -MD -MP -MF .deps/ftwi_4.Tpo -c ftwi_4.c -o ftwi_4.o echo timestamp > ftwi_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_5.lo -MD -MP -MF ".deps/ftwi_5.Tpo" \ -c -o ftwi_5.lo `test -f 'ftwi_5.c' || echo './'`ftwi_5.c; \ then mv ".deps/ftwi_5.Tpo" ".deps/ftwi_5.Plo"; \ else rm -f ".deps/ftwi_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_5.lo -MD -MP -MF .deps/ftwi_5.Tpo -c ftwi_5.c -o ftwi_5.o echo timestamp > ftwi_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_6.lo -MD -MP -MF ".deps/ftwi_6.Tpo" \ -c -o ftwi_6.lo `test -f 'ftwi_6.c' || echo './'`ftwi_6.c; \ then mv ".deps/ftwi_6.Tpo" ".deps/ftwi_6.Plo"; \ else rm -f ".deps/ftwi_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_6.lo -MD -MP -MF .deps/ftwi_6.Tpo -c ftwi_6.c -o ftwi_6.o echo timestamp > ftwi_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_7.lo -MD -MP -MF ".deps/ftwi_7.Tpo" \ -c -o ftwi_7.lo `test -f 'ftwi_7.c' || echo './'`ftwi_7.c; \ then mv ".deps/ftwi_7.Tpo" ".deps/ftwi_7.Plo"; \ else rm -f ".deps/ftwi_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_7.lo -MD -MP -MF .deps/ftwi_7.Tpo -c ftwi_7.c -o ftwi_7.o echo timestamp > ftwi_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_8.lo -MD -MP -MF ".deps/ftwi_8.Tpo" \ -c -o ftwi_8.lo `test -f 'ftwi_8.c' || echo './'`ftwi_8.c; \ then mv ".deps/ftwi_8.Tpo" ".deps/ftwi_8.Plo"; \ else rm -f ".deps/ftwi_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_8.lo -MD -MP -MF .deps/ftwi_8.Tpo -c ftwi_8.c -o ftwi_8.o echo timestamp > ftwi_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_9.lo -MD -MP -MF ".deps/ftwi_9.Tpo" \ -c -o ftwi_9.lo `test -f 'ftwi_9.c' || echo './'`ftwi_9.c; \ then mv ".deps/ftwi_9.Tpo" ".deps/ftwi_9.Plo"; \ else rm -f ".deps/ftwi_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_9.lo -MD -MP -MF .deps/ftwi_9.Tpo -c ftwi_9.c -o ftwi_9.o echo timestamp > ftwi_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_10.lo -MD -MP -MF ".deps/ftwi_10.Tpo" \ -c -o ftwi_10.lo `test -f 'ftwi_10.c' || echo './'`ftwi_10.c; \ then mv ".deps/ftwi_10.Tpo" ".deps/ftwi_10.Plo"; \ else rm -f ".deps/ftwi_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_10.lo -MD -MP -MF .deps/ftwi_10.Tpo -c ftwi_10.c -o ftwi_10.o echo timestamp > ftwi_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_16.lo -MD -MP -MF ".deps/ftwi_16.Tpo" \ -c -o ftwi_16.lo `test -f 'ftwi_16.c' || echo './'`ftwi_16.c; \ then mv ".deps/ftwi_16.Tpo" ".deps/ftwi_16.Plo"; \ else rm -f ".deps/ftwi_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_16.lo -MD -MP -MF .deps/ftwi_16.Tpo -c ftwi_16.c -o ftwi_16.o echo timestamp > ftwi_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_32.lo -MD -MP -MF ".deps/ftwi_32.Tpo" \ -c -o ftwi_32.lo `test -f 'ftwi_32.c' || echo './'`ftwi_32.c; \ then mv ".deps/ftwi_32.Tpo" ".deps/ftwi_32.Plo"; \ else rm -f ".deps/ftwi_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_32.lo -MD -MP -MF .deps/ftwi_32.Tpo -c ftwi_32.c -o ftwi_32.o echo timestamp > ftwi_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_64.lo -MD -MP -MF ".deps/ftwi_64.Tpo" \ -c -o ftwi_64.lo `test -f 'ftwi_64.c' || echo './'`ftwi_64.c; \ then mv ".deps/ftwi_64.Tpo" ".deps/ftwi_64.Plo"; \ else rm -f ".deps/ftwi_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT ftwi_64.lo -MD -MP -MF .deps/ftwi_64.Tpo -c ftwi_64.c -o ftwi_64.o echo timestamp > ftwi_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT timer.lo -MD -MP -MF ".deps/timer.Tpo" \ -c -o timer.lo `test -f 'timer.c' || echo './'`timer.c; \ then mv ".deps/timer.Tpo" ".deps/timer.Plo"; \ else rm -f ".deps/timer.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT timer.lo -MD -MP -MF .deps/timer.Tpo -c timer.c -o timer.o echo timestamp > timer.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT config.lo -MD -MP -MF ".deps/config.Tpo" \ -c -o config.lo `test -f 'config.c' || echo './'`config.c; \ then mv ".deps/config.Tpo" ".deps/config.Plo"; \ else rm -f ".deps/config.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT config.lo -MD -MP -MF .deps/config.Tpo -c config.c -o config.o echo timestamp > config.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT planner.lo -MD -MP -MF ".deps/planner.Tpo" \ -c -o planner.lo `test -f 'planner.c' || echo './'`planner.c; \ then mv ".deps/planner.Tpo" ".deps/planner.Plo"; \ else rm -f ".deps/planner.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT planner.lo -MD -MP -MF .deps/planner.Tpo -c planner.c -o planner.o echo timestamp > planner.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT twiddle.lo -MD -MP -MF ".deps/twiddle.Tpo" \ -c -o twiddle.lo `test -f 'twiddle.c' || echo './'`twiddle.c; \ then mv ".deps/twiddle.Tpo" ".deps/twiddle.Plo"; \ else rm -f ".deps/twiddle.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT twiddle.lo -MD -MP -MF .deps/twiddle.Tpo -c twiddle.c -o twiddle.o echo timestamp > twiddle.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT executor.lo -MD -MP -MF ".deps/executor.Tpo" \ -c -o executor.lo `test -f 'executor.c' || echo './'`executor.c; \ then mv ".deps/executor.Tpo" ".deps/executor.Plo"; \ else rm -f ".deps/executor.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT executor.lo -MD -MP -MF .deps/executor.Tpo -c executor.c -o executor.o echo timestamp > executor.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT generic.lo -MD -MP -MF ".deps/generic.Tpo" \ -c -o generic.lo `test -f 'generic.c' || echo './'`generic.c; \ then mv ".deps/generic.Tpo" ".deps/generic.Plo"; \ else rm -f ".deps/generic.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT generic.lo -MD -MP -MF .deps/generic.Tpo -c generic.c -o generic.o echo timestamp > generic.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftwnd.lo -MD -MP -MF ".deps/fftwnd.Tpo" \ -c -o fftwnd.lo `test -f 'fftwnd.c' || echo './'`fftwnd.c; \ then mv ".deps/fftwnd.Tpo" ".deps/fftwnd.Plo"; \ else rm -f ".deps/fftwnd.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftwnd.lo -MD -MP -MF .deps/fftwnd.Tpo -c fftwnd.c -o fftwnd.o echo timestamp > fftwnd.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT malloc.lo -MD -MP -MF ".deps/malloc.Tpo" \ -c -o malloc.lo `test -f 'malloc.c' || echo './'`malloc.c; \ then mv ".deps/malloc.Tpo" ".deps/malloc.Plo"; \ else rm -f ".deps/malloc.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT malloc.lo -MD -MP -MF .deps/malloc.Tpo -c malloc.c -o malloc.o echo timestamp > malloc.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT wisdom.lo -MD -MP -MF ".deps/wisdom.Tpo" \ -c -o wisdom.lo `test -f 'wisdom.c' || echo './'`wisdom.c; \ then mv ".deps/wisdom.Tpo" ".deps/wisdom.Plo"; \ else rm -f ".deps/wisdom.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT wisdom.lo -MD -MP -MF .deps/wisdom.Tpo -c wisdom.c -o wisdom.o echo timestamp > wisdom.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT wisdomio.lo -MD -MP -MF ".deps/wisdomio.Tpo" \ -c -o wisdomio.lo `test -f 'wisdomio.c' || echo './'`wisdomio.c; \ then mv ".deps/wisdomio.Tpo" ".deps/wisdomio.Plo"; \ else rm -f ".deps/wisdomio.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT wisdomio.lo -MD -MP -MF .deps/wisdomio.Tpo -c wisdomio.c -o wisdomio.o echo timestamp > wisdomio.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT putils.lo -MD -MP -MF ".deps/putils.Tpo" \ -c -o putils.lo `test -f 'putils.c' || echo './'`putils.c; \ then mv ".deps/putils.Tpo" ".deps/putils.Plo"; \ else rm -f ".deps/putils.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT putils.lo -MD -MP -MF .deps/putils.Tpo -c putils.c -o putils.o echo timestamp > putils.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rader.lo -MD -MP -MF ".deps/rader.Tpo" \ -c -o rader.lo `test -f 'rader.c' || echo './'`rader.c; \ then mv ".deps/rader.Tpo" ".deps/rader.Plo"; \ else rm -f ".deps/rader.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rader.lo -MD -MP -MF .deps/rader.Tpo -c rader.c -o rader.o echo timestamp > rader.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftwf77.lo -MD -MP -MF ".deps/fftwf77.Tpo" \ -c -o fftwf77.lo `test -f 'fftwf77.c' || echo './'`fftwf77.c; \ then mv ".deps/fftwf77.Tpo" ".deps/fftwf77.Plo"; \ else rm -f ".deps/fftwf77.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftwf77.lo -MD -MP -MF .deps/fftwf77.Tpo -c fftwf77.c -o fftwf77.o echo timestamp > fftwf77.lo /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o libdfftw.la -rpath /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 -version-info 2:7:0 fn_1.lo fn_2.lo fn_3.lo fn_4.lo fn_5.lo fn_6.lo fn_7.lo fn_8.lo fn_9.lo fn_10.lo fn_11.lo fn_12.lo fn_13.lo fn_14.lo fn_15.lo fn_16.lo fn_32.lo fn_64.lo ftw_2.lo ftw_3.lo ftw_4.lo ftw_5.lo ftw_6.lo ftw_7.lo ftw_8.lo ftw_9.lo ftw_10.lo ftw_16.lo ftw_32.lo ftw_64.lo fni_1.lo fni_2.lo fni_3.lo fni_4.lo fni_5.lo fni_6.lo fni_7.lo fni_8.lo fni_9.lo fni_10.lo fni_11.lo fni_12.lo fni_13.lo fni_14.lo fni_15.lo fni_16.lo fni_32.lo fni_64.lo ftwi_2.lo ftwi_3.lo ftwi_4.lo ftwi_5.lo ftwi_6.lo ftwi_7.lo ftwi_8.lo ftwi_9.lo ftwi_10.lo ftwi_16.lo ftwi_32.lo ftwi_64.lo timer.lo config.lo planner.lo twiddle.lo executor.lo generic.lo fftwnd.lo malloc.lo wisdom.lo wisdomio.lo putils.lo rader.lo fftwf77.lo -lm mkdir .libs rm -fr .libs/libdfftw.la .libs/libdfftw.* .libs/libdfftw.* ar cru .libs/libdfftw.a fn_1.o fn_2.o fn_3.o fn_4.o fn_5.o fn_6.o fn_7.o fn_8.o fn_9.o fn_10.o fn_11.o fn_12.o fn_13.o fn_14.o fn_15.o fn_16.o fn_32.o fn_64.o ftw_2.o ftw_3.o ftw_4.o ftw_5.o ftw_6.o ftw_7.o ftw_8.o ftw_9.o ftw_10.o ftw_16.o ftw_32.o ftw_64.o fni_1.o fni_2.o fni_3.o fni_4.o fni_5.o fni_6.o fni_7.o fni_8.o fni_9.o fni_10.o fni_11.o fni_12.o fni_13.o fni_14.o fni_15.o fni_16.o fni_32.o fni_64.o ftwi_2.o ftwi_3.o ftwi_4.o ftwi_5.o ftwi_6.o ftwi_7.o ftwi_8.o ftwi_9.o ftwi_10.o ftwi_16.o ftwi_32.o ftwi_64.o timer.o config.o planner.o twiddle.o executor.o generic.o fftwnd.o malloc.o wisdom.o wisdomio.o putils.o rader.o fftwf77.o ranlib .libs/libdfftw.a creating libdfftw.la (cd .libs && rm -f libdfftw.la && ln -s ../libdfftw.la libdfftw.la) rm -f dfftw.h sed 's/\"fftw/\"dfftw/g;s/\"rfftw/\"drfftw/g' ./fftw.h > dfftw.h make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../libtool --mode=install /usr/bin/install -c libdfftw.la /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.la /usr/bin/install -c .libs/libdfftw.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.la /usr/bin/install -c .libs/libdfftw.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.a ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.a chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.a PATH="$PATH:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include /usr/bin/install -c -m 644 dfftw.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/dfftw.h make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' Making install in rfftw make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_1.lo -MD -MP -MF ".deps/frc_1.Tpo" \ -c -o frc_1.lo `test -f 'frc_1.c' || echo './'`frc_1.c; \ then mv ".deps/frc_1.Tpo" ".deps/frc_1.Plo"; \ else rm -f ".deps/frc_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_1.lo -MD -MP -MF .deps/frc_1.Tpo -c frc_1.c -o frc_1.o echo timestamp > frc_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_2.lo -MD -MP -MF ".deps/frc_2.Tpo" \ -c -o frc_2.lo `test -f 'frc_2.c' || echo './'`frc_2.c; \ then mv ".deps/frc_2.Tpo" ".deps/frc_2.Plo"; \ else rm -f ".deps/frc_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_2.lo -MD -MP -MF .deps/frc_2.Tpo -c frc_2.c -o frc_2.o echo timestamp > frc_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_3.lo -MD -MP -MF ".deps/frc_3.Tpo" \ -c -o frc_3.lo `test -f 'frc_3.c' || echo './'`frc_3.c; \ then mv ".deps/frc_3.Tpo" ".deps/frc_3.Plo"; \ else rm -f ".deps/frc_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_3.lo -MD -MP -MF .deps/frc_3.Tpo -c frc_3.c -o frc_3.o echo timestamp > frc_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_4.lo -MD -MP -MF ".deps/frc_4.Tpo" \ -c -o frc_4.lo `test -f 'frc_4.c' || echo './'`frc_4.c; \ then mv ".deps/frc_4.Tpo" ".deps/frc_4.Plo"; \ else rm -f ".deps/frc_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_4.lo -MD -MP -MF .deps/frc_4.Tpo -c frc_4.c -o frc_4.o echo timestamp > frc_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_5.lo -MD -MP -MF ".deps/frc_5.Tpo" \ -c -o frc_5.lo `test -f 'frc_5.c' || echo './'`frc_5.c; \ then mv ".deps/frc_5.Tpo" ".deps/frc_5.Plo"; \ else rm -f ".deps/frc_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_5.lo -MD -MP -MF .deps/frc_5.Tpo -c frc_5.c -o frc_5.o echo timestamp > frc_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_6.lo -MD -MP -MF ".deps/frc_6.Tpo" \ -c -o frc_6.lo `test -f 'frc_6.c' || echo './'`frc_6.c; \ then mv ".deps/frc_6.Tpo" ".deps/frc_6.Plo"; \ else rm -f ".deps/frc_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_6.lo -MD -MP -MF .deps/frc_6.Tpo -c frc_6.c -o frc_6.o echo timestamp > frc_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_7.lo -MD -MP -MF ".deps/frc_7.Tpo" \ -c -o frc_7.lo `test -f 'frc_7.c' || echo './'`frc_7.c; \ then mv ".deps/frc_7.Tpo" ".deps/frc_7.Plo"; \ else rm -f ".deps/frc_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_7.lo -MD -MP -MF .deps/frc_7.Tpo -c frc_7.c -o frc_7.o echo timestamp > frc_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_8.lo -MD -MP -MF ".deps/frc_8.Tpo" \ -c -o frc_8.lo `test -f 'frc_8.c' || echo './'`frc_8.c; \ then mv ".deps/frc_8.Tpo" ".deps/frc_8.Plo"; \ else rm -f ".deps/frc_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_8.lo -MD -MP -MF .deps/frc_8.Tpo -c frc_8.c -o frc_8.o echo timestamp > frc_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_9.lo -MD -MP -MF ".deps/frc_9.Tpo" \ -c -o frc_9.lo `test -f 'frc_9.c' || echo './'`frc_9.c; \ then mv ".deps/frc_9.Tpo" ".deps/frc_9.Plo"; \ else rm -f ".deps/frc_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_9.lo -MD -MP -MF .deps/frc_9.Tpo -c frc_9.c -o frc_9.o echo timestamp > frc_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_10.lo -MD -MP -MF ".deps/frc_10.Tpo" \ -c -o frc_10.lo `test -f 'frc_10.c' || echo './'`frc_10.c; \ then mv ".deps/frc_10.Tpo" ".deps/frc_10.Plo"; \ else rm -f ".deps/frc_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_10.lo -MD -MP -MF .deps/frc_10.Tpo -c frc_10.c -o frc_10.o echo timestamp > frc_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_11.lo -MD -MP -MF ".deps/frc_11.Tpo" \ -c -o frc_11.lo `test -f 'frc_11.c' || echo './'`frc_11.c; \ then mv ".deps/frc_11.Tpo" ".deps/frc_11.Plo"; \ else rm -f ".deps/frc_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_11.lo -MD -MP -MF .deps/frc_11.Tpo -c frc_11.c -o frc_11.o echo timestamp > frc_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_12.lo -MD -MP -MF ".deps/frc_12.Tpo" \ -c -o frc_12.lo `test -f 'frc_12.c' || echo './'`frc_12.c; \ then mv ".deps/frc_12.Tpo" ".deps/frc_12.Plo"; \ else rm -f ".deps/frc_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_12.lo -MD -MP -MF .deps/frc_12.Tpo -c frc_12.c -o frc_12.o echo timestamp > frc_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_13.lo -MD -MP -MF ".deps/frc_13.Tpo" \ -c -o frc_13.lo `test -f 'frc_13.c' || echo './'`frc_13.c; \ then mv ".deps/frc_13.Tpo" ".deps/frc_13.Plo"; \ else rm -f ".deps/frc_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_13.lo -MD -MP -MF .deps/frc_13.Tpo -c frc_13.c -o frc_13.o echo timestamp > frc_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_14.lo -MD -MP -MF ".deps/frc_14.Tpo" \ -c -o frc_14.lo `test -f 'frc_14.c' || echo './'`frc_14.c; \ then mv ".deps/frc_14.Tpo" ".deps/frc_14.Plo"; \ else rm -f ".deps/frc_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_14.lo -MD -MP -MF .deps/frc_14.Tpo -c frc_14.c -o frc_14.o echo timestamp > frc_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_15.lo -MD -MP -MF ".deps/frc_15.Tpo" \ -c -o frc_15.lo `test -f 'frc_15.c' || echo './'`frc_15.c; \ then mv ".deps/frc_15.Tpo" ".deps/frc_15.Plo"; \ else rm -f ".deps/frc_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_15.lo -MD -MP -MF .deps/frc_15.Tpo -c frc_15.c -o frc_15.o echo timestamp > frc_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_16.lo -MD -MP -MF ".deps/frc_16.Tpo" \ -c -o frc_16.lo `test -f 'frc_16.c' || echo './'`frc_16.c; \ then mv ".deps/frc_16.Tpo" ".deps/frc_16.Plo"; \ else rm -f ".deps/frc_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_16.lo -MD -MP -MF .deps/frc_16.Tpo -c frc_16.c -o frc_16.o echo timestamp > frc_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_32.lo -MD -MP -MF ".deps/frc_32.Tpo" \ -c -o frc_32.lo `test -f 'frc_32.c' || echo './'`frc_32.c; \ then mv ".deps/frc_32.Tpo" ".deps/frc_32.Plo"; \ else rm -f ".deps/frc_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_32.lo -MD -MP -MF .deps/frc_32.Tpo -c frc_32.c -o frc_32.o echo timestamp > frc_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_64.lo -MD -MP -MF ".deps/frc_64.Tpo" \ -c -o frc_64.lo `test -f 'frc_64.c' || echo './'`frc_64.c; \ then mv ".deps/frc_64.Tpo" ".deps/frc_64.Plo"; \ else rm -f ".deps/frc_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_64.lo -MD -MP -MF .deps/frc_64.Tpo -c frc_64.c -o frc_64.o echo timestamp > frc_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_128.lo -MD -MP -MF ".deps/frc_128.Tpo" \ -c -o frc_128.lo `test -f 'frc_128.c' || echo './'`frc_128.c; \ then mv ".deps/frc_128.Tpo" ".deps/frc_128.Plo"; \ else rm -f ".deps/frc_128.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT frc_128.lo -MD -MP -MF .deps/frc_128.Tpo -c frc_128.c -o frc_128.o echo timestamp > frc_128.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_2.lo -MD -MP -MF ".deps/fhf_2.Tpo" \ -c -o fhf_2.lo `test -f 'fhf_2.c' || echo './'`fhf_2.c; \ then mv ".deps/fhf_2.Tpo" ".deps/fhf_2.Plo"; \ else rm -f ".deps/fhf_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_2.lo -MD -MP -MF .deps/fhf_2.Tpo -c fhf_2.c -o fhf_2.o echo timestamp > fhf_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_3.lo -MD -MP -MF ".deps/fhf_3.Tpo" \ -c -o fhf_3.lo `test -f 'fhf_3.c' || echo './'`fhf_3.c; \ then mv ".deps/fhf_3.Tpo" ".deps/fhf_3.Plo"; \ else rm -f ".deps/fhf_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_3.lo -MD -MP -MF .deps/fhf_3.Tpo -c fhf_3.c -o fhf_3.o echo timestamp > fhf_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_4.lo -MD -MP -MF ".deps/fhf_4.Tpo" \ -c -o fhf_4.lo `test -f 'fhf_4.c' || echo './'`fhf_4.c; \ then mv ".deps/fhf_4.Tpo" ".deps/fhf_4.Plo"; \ else rm -f ".deps/fhf_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_4.lo -MD -MP -MF .deps/fhf_4.Tpo -c fhf_4.c -o fhf_4.o echo timestamp > fhf_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_5.lo -MD -MP -MF ".deps/fhf_5.Tpo" \ -c -o fhf_5.lo `test -f 'fhf_5.c' || echo './'`fhf_5.c; \ then mv ".deps/fhf_5.Tpo" ".deps/fhf_5.Plo"; \ else rm -f ".deps/fhf_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_5.lo -MD -MP -MF .deps/fhf_5.Tpo -c fhf_5.c -o fhf_5.o echo timestamp > fhf_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_6.lo -MD -MP -MF ".deps/fhf_6.Tpo" \ -c -o fhf_6.lo `test -f 'fhf_6.c' || echo './'`fhf_6.c; \ then mv ".deps/fhf_6.Tpo" ".deps/fhf_6.Plo"; \ else rm -f ".deps/fhf_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_6.lo -MD -MP -MF .deps/fhf_6.Tpo -c fhf_6.c -o fhf_6.o echo timestamp > fhf_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_7.lo -MD -MP -MF ".deps/fhf_7.Tpo" \ -c -o fhf_7.lo `test -f 'fhf_7.c' || echo './'`fhf_7.c; \ then mv ".deps/fhf_7.Tpo" ".deps/fhf_7.Plo"; \ else rm -f ".deps/fhf_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_7.lo -MD -MP -MF .deps/fhf_7.Tpo -c fhf_7.c -o fhf_7.o echo timestamp > fhf_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_8.lo -MD -MP -MF ".deps/fhf_8.Tpo" \ -c -o fhf_8.lo `test -f 'fhf_8.c' || echo './'`fhf_8.c; \ then mv ".deps/fhf_8.Tpo" ".deps/fhf_8.Plo"; \ else rm -f ".deps/fhf_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_8.lo -MD -MP -MF .deps/fhf_8.Tpo -c fhf_8.c -o fhf_8.o echo timestamp > fhf_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_9.lo -MD -MP -MF ".deps/fhf_9.Tpo" \ -c -o fhf_9.lo `test -f 'fhf_9.c' || echo './'`fhf_9.c; \ then mv ".deps/fhf_9.Tpo" ".deps/fhf_9.Plo"; \ else rm -f ".deps/fhf_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_9.lo -MD -MP -MF .deps/fhf_9.Tpo -c fhf_9.c -o fhf_9.o echo timestamp > fhf_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_10.lo -MD -MP -MF ".deps/fhf_10.Tpo" \ -c -o fhf_10.lo `test -f 'fhf_10.c' || echo './'`fhf_10.c; \ then mv ".deps/fhf_10.Tpo" ".deps/fhf_10.Plo"; \ else rm -f ".deps/fhf_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_10.lo -MD -MP -MF .deps/fhf_10.Tpo -c fhf_10.c -o fhf_10.o echo timestamp > fhf_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_16.lo -MD -MP -MF ".deps/fhf_16.Tpo" \ -c -o fhf_16.lo `test -f 'fhf_16.c' || echo './'`fhf_16.c; \ then mv ".deps/fhf_16.Tpo" ".deps/fhf_16.Plo"; \ else rm -f ".deps/fhf_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_16.lo -MD -MP -MF .deps/fhf_16.Tpo -c fhf_16.c -o fhf_16.o echo timestamp > fhf_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_32.lo -MD -MP -MF ".deps/fhf_32.Tpo" \ -c -o fhf_32.lo `test -f 'fhf_32.c' || echo './'`fhf_32.c; \ then mv ".deps/fhf_32.Tpo" ".deps/fhf_32.Plo"; \ else rm -f ".deps/fhf_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhf_32.lo -MD -MP -MF .deps/fhf_32.Tpo -c fhf_32.c -o fhf_32.o echo timestamp > fhf_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_1.lo -MD -MP -MF ".deps/fcr_1.Tpo" \ -c -o fcr_1.lo `test -f 'fcr_1.c' || echo './'`fcr_1.c; \ then mv ".deps/fcr_1.Tpo" ".deps/fcr_1.Plo"; \ else rm -f ".deps/fcr_1.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_1.lo -MD -MP -MF .deps/fcr_1.Tpo -c fcr_1.c -o fcr_1.o echo timestamp > fcr_1.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_2.lo -MD -MP -MF ".deps/fcr_2.Tpo" \ -c -o fcr_2.lo `test -f 'fcr_2.c' || echo './'`fcr_2.c; \ then mv ".deps/fcr_2.Tpo" ".deps/fcr_2.Plo"; \ else rm -f ".deps/fcr_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_2.lo -MD -MP -MF .deps/fcr_2.Tpo -c fcr_2.c -o fcr_2.o echo timestamp > fcr_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_3.lo -MD -MP -MF ".deps/fcr_3.Tpo" \ -c -o fcr_3.lo `test -f 'fcr_3.c' || echo './'`fcr_3.c; \ then mv ".deps/fcr_3.Tpo" ".deps/fcr_3.Plo"; \ else rm -f ".deps/fcr_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_3.lo -MD -MP -MF .deps/fcr_3.Tpo -c fcr_3.c -o fcr_3.o echo timestamp > fcr_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_4.lo -MD -MP -MF ".deps/fcr_4.Tpo" \ -c -o fcr_4.lo `test -f 'fcr_4.c' || echo './'`fcr_4.c; \ then mv ".deps/fcr_4.Tpo" ".deps/fcr_4.Plo"; \ else rm -f ".deps/fcr_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_4.lo -MD -MP -MF .deps/fcr_4.Tpo -c fcr_4.c -o fcr_4.o echo timestamp > fcr_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_5.lo -MD -MP -MF ".deps/fcr_5.Tpo" \ -c -o fcr_5.lo `test -f 'fcr_5.c' || echo './'`fcr_5.c; \ then mv ".deps/fcr_5.Tpo" ".deps/fcr_5.Plo"; \ else rm -f ".deps/fcr_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_5.lo -MD -MP -MF .deps/fcr_5.Tpo -c fcr_5.c -o fcr_5.o echo timestamp > fcr_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_6.lo -MD -MP -MF ".deps/fcr_6.Tpo" \ -c -o fcr_6.lo `test -f 'fcr_6.c' || echo './'`fcr_6.c; \ then mv ".deps/fcr_6.Tpo" ".deps/fcr_6.Plo"; \ else rm -f ".deps/fcr_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_6.lo -MD -MP -MF .deps/fcr_6.Tpo -c fcr_6.c -o fcr_6.o echo timestamp > fcr_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_7.lo -MD -MP -MF ".deps/fcr_7.Tpo" \ -c -o fcr_7.lo `test -f 'fcr_7.c' || echo './'`fcr_7.c; \ then mv ".deps/fcr_7.Tpo" ".deps/fcr_7.Plo"; \ else rm -f ".deps/fcr_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_7.lo -MD -MP -MF .deps/fcr_7.Tpo -c fcr_7.c -o fcr_7.o echo timestamp > fcr_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_8.lo -MD -MP -MF ".deps/fcr_8.Tpo" \ -c -o fcr_8.lo `test -f 'fcr_8.c' || echo './'`fcr_8.c; \ then mv ".deps/fcr_8.Tpo" ".deps/fcr_8.Plo"; \ else rm -f ".deps/fcr_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_8.lo -MD -MP -MF .deps/fcr_8.Tpo -c fcr_8.c -o fcr_8.o echo timestamp > fcr_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_9.lo -MD -MP -MF ".deps/fcr_9.Tpo" \ -c -o fcr_9.lo `test -f 'fcr_9.c' || echo './'`fcr_9.c; \ then mv ".deps/fcr_9.Tpo" ".deps/fcr_9.Plo"; \ else rm -f ".deps/fcr_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_9.lo -MD -MP -MF .deps/fcr_9.Tpo -c fcr_9.c -o fcr_9.o echo timestamp > fcr_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_10.lo -MD -MP -MF ".deps/fcr_10.Tpo" \ -c -o fcr_10.lo `test -f 'fcr_10.c' || echo './'`fcr_10.c; \ then mv ".deps/fcr_10.Tpo" ".deps/fcr_10.Plo"; \ else rm -f ".deps/fcr_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_10.lo -MD -MP -MF .deps/fcr_10.Tpo -c fcr_10.c -o fcr_10.o echo timestamp > fcr_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_11.lo -MD -MP -MF ".deps/fcr_11.Tpo" \ -c -o fcr_11.lo `test -f 'fcr_11.c' || echo './'`fcr_11.c; \ then mv ".deps/fcr_11.Tpo" ".deps/fcr_11.Plo"; \ else rm -f ".deps/fcr_11.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_11.lo -MD -MP -MF .deps/fcr_11.Tpo -c fcr_11.c -o fcr_11.o echo timestamp > fcr_11.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_12.lo -MD -MP -MF ".deps/fcr_12.Tpo" \ -c -o fcr_12.lo `test -f 'fcr_12.c' || echo './'`fcr_12.c; \ then mv ".deps/fcr_12.Tpo" ".deps/fcr_12.Plo"; \ else rm -f ".deps/fcr_12.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_12.lo -MD -MP -MF .deps/fcr_12.Tpo -c fcr_12.c -o fcr_12.o echo timestamp > fcr_12.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_13.lo -MD -MP -MF ".deps/fcr_13.Tpo" \ -c -o fcr_13.lo `test -f 'fcr_13.c' || echo './'`fcr_13.c; \ then mv ".deps/fcr_13.Tpo" ".deps/fcr_13.Plo"; \ else rm -f ".deps/fcr_13.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_13.lo -MD -MP -MF .deps/fcr_13.Tpo -c fcr_13.c -o fcr_13.o echo timestamp > fcr_13.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_14.lo -MD -MP -MF ".deps/fcr_14.Tpo" \ -c -o fcr_14.lo `test -f 'fcr_14.c' || echo './'`fcr_14.c; \ then mv ".deps/fcr_14.Tpo" ".deps/fcr_14.Plo"; \ else rm -f ".deps/fcr_14.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_14.lo -MD -MP -MF .deps/fcr_14.Tpo -c fcr_14.c -o fcr_14.o echo timestamp > fcr_14.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_15.lo -MD -MP -MF ".deps/fcr_15.Tpo" \ -c -o fcr_15.lo `test -f 'fcr_15.c' || echo './'`fcr_15.c; \ then mv ".deps/fcr_15.Tpo" ".deps/fcr_15.Plo"; \ else rm -f ".deps/fcr_15.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_15.lo -MD -MP -MF .deps/fcr_15.Tpo -c fcr_15.c -o fcr_15.o echo timestamp > fcr_15.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_16.lo -MD -MP -MF ".deps/fcr_16.Tpo" \ -c -o fcr_16.lo `test -f 'fcr_16.c' || echo './'`fcr_16.c; \ then mv ".deps/fcr_16.Tpo" ".deps/fcr_16.Plo"; \ else rm -f ".deps/fcr_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_16.lo -MD -MP -MF .deps/fcr_16.Tpo -c fcr_16.c -o fcr_16.o echo timestamp > fcr_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_32.lo -MD -MP -MF ".deps/fcr_32.Tpo" \ -c -o fcr_32.lo `test -f 'fcr_32.c' || echo './'`fcr_32.c; \ then mv ".deps/fcr_32.Tpo" ".deps/fcr_32.Plo"; \ else rm -f ".deps/fcr_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_32.lo -MD -MP -MF .deps/fcr_32.Tpo -c fcr_32.c -o fcr_32.o echo timestamp > fcr_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_64.lo -MD -MP -MF ".deps/fcr_64.Tpo" \ -c -o fcr_64.lo `test -f 'fcr_64.c' || echo './'`fcr_64.c; \ then mv ".deps/fcr_64.Tpo" ".deps/fcr_64.Plo"; \ else rm -f ".deps/fcr_64.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_64.lo -MD -MP -MF .deps/fcr_64.Tpo -c fcr_64.c -o fcr_64.o echo timestamp > fcr_64.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_128.lo -MD -MP -MF ".deps/fcr_128.Tpo" \ -c -o fcr_128.lo `test -f 'fcr_128.c' || echo './'`fcr_128.c; \ then mv ".deps/fcr_128.Tpo" ".deps/fcr_128.Plo"; \ else rm -f ".deps/fcr_128.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fcr_128.lo -MD -MP -MF .deps/fcr_128.Tpo -c fcr_128.c -o fcr_128.o echo timestamp > fcr_128.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_2.lo -MD -MP -MF ".deps/fhb_2.Tpo" \ -c -o fhb_2.lo `test -f 'fhb_2.c' || echo './'`fhb_2.c; \ then mv ".deps/fhb_2.Tpo" ".deps/fhb_2.Plo"; \ else rm -f ".deps/fhb_2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_2.lo -MD -MP -MF .deps/fhb_2.Tpo -c fhb_2.c -o fhb_2.o echo timestamp > fhb_2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_3.lo -MD -MP -MF ".deps/fhb_3.Tpo" \ -c -o fhb_3.lo `test -f 'fhb_3.c' || echo './'`fhb_3.c; \ then mv ".deps/fhb_3.Tpo" ".deps/fhb_3.Plo"; \ else rm -f ".deps/fhb_3.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_3.lo -MD -MP -MF .deps/fhb_3.Tpo -c fhb_3.c -o fhb_3.o echo timestamp > fhb_3.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_4.lo -MD -MP -MF ".deps/fhb_4.Tpo" \ -c -o fhb_4.lo `test -f 'fhb_4.c' || echo './'`fhb_4.c; \ then mv ".deps/fhb_4.Tpo" ".deps/fhb_4.Plo"; \ else rm -f ".deps/fhb_4.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_4.lo -MD -MP -MF .deps/fhb_4.Tpo -c fhb_4.c -o fhb_4.o echo timestamp > fhb_4.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_5.lo -MD -MP -MF ".deps/fhb_5.Tpo" \ -c -o fhb_5.lo `test -f 'fhb_5.c' || echo './'`fhb_5.c; \ then mv ".deps/fhb_5.Tpo" ".deps/fhb_5.Plo"; \ else rm -f ".deps/fhb_5.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_5.lo -MD -MP -MF .deps/fhb_5.Tpo -c fhb_5.c -o fhb_5.o echo timestamp > fhb_5.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_6.lo -MD -MP -MF ".deps/fhb_6.Tpo" \ -c -o fhb_6.lo `test -f 'fhb_6.c' || echo './'`fhb_6.c; \ then mv ".deps/fhb_6.Tpo" ".deps/fhb_6.Plo"; \ else rm -f ".deps/fhb_6.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_6.lo -MD -MP -MF .deps/fhb_6.Tpo -c fhb_6.c -o fhb_6.o echo timestamp > fhb_6.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_7.lo -MD -MP -MF ".deps/fhb_7.Tpo" \ -c -o fhb_7.lo `test -f 'fhb_7.c' || echo './'`fhb_7.c; \ then mv ".deps/fhb_7.Tpo" ".deps/fhb_7.Plo"; \ else rm -f ".deps/fhb_7.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_7.lo -MD -MP -MF .deps/fhb_7.Tpo -c fhb_7.c -o fhb_7.o echo timestamp > fhb_7.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_8.lo -MD -MP -MF ".deps/fhb_8.Tpo" \ -c -o fhb_8.lo `test -f 'fhb_8.c' || echo './'`fhb_8.c; \ then mv ".deps/fhb_8.Tpo" ".deps/fhb_8.Plo"; \ else rm -f ".deps/fhb_8.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_8.lo -MD -MP -MF .deps/fhb_8.Tpo -c fhb_8.c -o fhb_8.o echo timestamp > fhb_8.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_9.lo -MD -MP -MF ".deps/fhb_9.Tpo" \ -c -o fhb_9.lo `test -f 'fhb_9.c' || echo './'`fhb_9.c; \ then mv ".deps/fhb_9.Tpo" ".deps/fhb_9.Plo"; \ else rm -f ".deps/fhb_9.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_9.lo -MD -MP -MF .deps/fhb_9.Tpo -c fhb_9.c -o fhb_9.o echo timestamp > fhb_9.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_10.lo -MD -MP -MF ".deps/fhb_10.Tpo" \ -c -o fhb_10.lo `test -f 'fhb_10.c' || echo './'`fhb_10.c; \ then mv ".deps/fhb_10.Tpo" ".deps/fhb_10.Plo"; \ else rm -f ".deps/fhb_10.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_10.lo -MD -MP -MF .deps/fhb_10.Tpo -c fhb_10.c -o fhb_10.o echo timestamp > fhb_10.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_16.lo -MD -MP -MF ".deps/fhb_16.Tpo" \ -c -o fhb_16.lo `test -f 'fhb_16.c' || echo './'`fhb_16.c; \ then mv ".deps/fhb_16.Tpo" ".deps/fhb_16.Plo"; \ else rm -f ".deps/fhb_16.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_16.lo -MD -MP -MF .deps/fhb_16.Tpo -c fhb_16.c -o fhb_16.o echo timestamp > fhb_16.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_32.lo -MD -MP -MF ".deps/fhb_32.Tpo" \ -c -o fhb_32.lo `test -f 'fhb_32.c' || echo './'`fhb_32.c; \ then mv ".deps/fhb_32.Tpo" ".deps/fhb_32.Plo"; \ else rm -f ".deps/fhb_32.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fhb_32.lo -MD -MP -MF .deps/fhb_32.Tpo -c fhb_32.c -o fhb_32.o echo timestamp > fhb_32.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rconfig.lo -MD -MP -MF ".deps/rconfig.Tpo" \ -c -o rconfig.lo `test -f 'rconfig.c' || echo './'`rconfig.c; \ then mv ".deps/rconfig.Tpo" ".deps/rconfig.Plo"; \ else rm -f ".deps/rconfig.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rconfig.lo -MD -MP -MF .deps/rconfig.Tpo -c rconfig.c -o rconfig.o echo timestamp > rconfig.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rplanner.lo -MD -MP -MF ".deps/rplanner.Tpo" \ -c -o rplanner.lo `test -f 'rplanner.c' || echo './'`rplanner.c; \ then mv ".deps/rplanner.Tpo" ".deps/rplanner.Plo"; \ else rm -f ".deps/rplanner.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rplanner.lo -MD -MP -MF .deps/rplanner.Tpo -c rplanner.c -o rplanner.o echo timestamp > rplanner.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rexec.lo -MD -MP -MF ".deps/rexec.Tpo" \ -c -o rexec.lo `test -f 'rexec.c' || echo './'`rexec.c; \ then mv ".deps/rexec.Tpo" ".deps/rexec.Plo"; \ else rm -f ".deps/rexec.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rexec.lo -MD -MP -MF .deps/rexec.Tpo -c rexec.c -o rexec.o echo timestamp > rexec.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rexec2.lo -MD -MP -MF ".deps/rexec2.Tpo" \ -c -o rexec2.lo `test -f 'rexec2.c' || echo './'`rexec2.c; \ then mv ".deps/rexec2.Tpo" ".deps/rexec2.Plo"; \ else rm -f ".deps/rexec2.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rexec2.lo -MD -MP -MF .deps/rexec2.Tpo -c rexec2.c -o rexec2.o echo timestamp > rexec2.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftwnd.lo -MD -MP -MF ".deps/rfftwnd.Tpo" \ -c -o rfftwnd.lo `test -f 'rfftwnd.c' || echo './'`rfftwnd.c; \ then mv ".deps/rfftwnd.Tpo" ".deps/rfftwnd.Plo"; \ else rm -f ".deps/rfftwnd.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftwnd.lo -MD -MP -MF .deps/rfftwnd.Tpo -c rfftwnd.c -o rfftwnd.o echo timestamp > rfftwnd.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rgeneric.lo -MD -MP -MF ".deps/rgeneric.Tpo" \ -c -o rgeneric.lo `test -f 'rgeneric.c' || echo './'`rgeneric.c; \ then mv ".deps/rgeneric.Tpo" ".deps/rgeneric.Plo"; \ else rm -f ".deps/rgeneric.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rgeneric.lo -MD -MP -MF .deps/rgeneric.Tpo -c rgeneric.c -o rgeneric.o echo timestamp > rgeneric.lo if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftwf77.lo -MD -MP -MF ".deps/rfftwf77.Tpo" \ -c -o rfftwf77.lo `test -f 'rfftwf77.c' || echo './'`rfftwf77.c; \ then mv ".deps/rfftwf77.Tpo" ".deps/rfftwf77.Plo"; \ else rm -f ".deps/rfftwf77.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I. -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftwf77.lo -MD -MP -MF .deps/rfftwf77.Tpo -c rfftwf77.c -o rfftwf77.o echo timestamp > rfftwf77.lo /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o libdrfftw.la -rpath /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 -version-info 2:7:0 frc_1.lo frc_2.lo frc_3.lo frc_4.lo frc_5.lo frc_6.lo frc_7.lo frc_8.lo frc_9.lo frc_10.lo frc_11.lo frc_12.lo frc_13.lo frc_14.lo frc_15.lo frc_16.lo frc_32.lo frc_64.lo frc_128.lo fhf_2.lo fhf_3.lo fhf_4.lo fhf_5.lo fhf_6.lo fhf_7.lo fhf_8.lo fhf_9.lo fhf_10.lo fhf_16.lo fhf_32.lo fcr_1.lo fcr_2.lo fcr_3.lo fcr_4.lo fcr_5.lo fcr_6.lo fcr_7.lo fcr_8.lo fcr_9.lo fcr_10.lo fcr_11.lo fcr_12.lo fcr_13.lo fcr_14.lo fcr_15.lo fcr_16.lo fcr_32.lo fcr_64.lo fcr_128.lo fhb_2.lo fhb_3.lo fhb_4.lo fhb_5.lo fhb_6.lo fhb_7.lo fhb_8.lo fhb_9.lo fhb_10.lo fhb_16.lo fhb_32.lo rconfig.lo rplanner.lo rexec.lo rexec2.lo rfftwnd.lo rgeneric.lo rfftwf77.lo -lm mkdir .libs rm -fr .libs/libdrfftw.la .libs/libdrfftw.* .libs/libdrfftw.* ar cru .libs/libdrfftw.a frc_1.o frc_2.o frc_3.o frc_4.o frc_5.o frc_6.o frc_7.o frc_8.o frc_9.o frc_10.o frc_11.o frc_12.o frc_13.o frc_14.o frc_15.o frc_16.o frc_32.o frc_64.o frc_128.o fhf_2.o fhf_3.o fhf_4.o fhf_5.o fhf_6.o fhf_7.o fhf_8.o fhf_9.o fhf_10.o fhf_16.o fhf_32.o fcr_1.o fcr_2.o fcr_3.o fcr_4.o fcr_5.o fcr_6.o fcr_7.o fcr_8.o fcr_9.o fcr_10.o fcr_11.o fcr_12.o fcr_13.o fcr_14.o fcr_15.o fcr_16.o fcr_32.o fcr_64.o fcr_128.o fhb_2.o fhb_3.o fhb_4.o fhb_5.o fhb_6.o fhb_7.o fhb_8.o fhb_9.o fhb_10.o fhb_16.o fhb_32.o rconfig.o rplanner.o rexec.o rexec2.o rfftwnd.o rgeneric.o rfftwf77.o ranlib .libs/libdrfftw.a creating libdrfftw.la (cd .libs && rm -f libdrfftw.la && ln -s ../libdrfftw.la libdrfftw.la) rm -f drfftw.h sed 's/\"fftw/\"dfftw/g;s/\"rfftw/\"drfftw/g' ./rfftw.h > drfftw.h make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../libtool --mode=install /usr/bin/install -c libdrfftw.la /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.la /usr/bin/install -c .libs/libdrfftw.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.la /usr/bin/install -c .libs/libdrfftw.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.a ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.a chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.a PATH="$PATH:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include /usr/bin/install -c -m 644 drfftw.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/drfftw.h make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' Making install in tests make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' if gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I./../rfftw -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT fftw_test.o -MD -MP -MF ".deps/fftw_test.Tpo" \ -c -o fftw_test.o `test -f 'fftw_test.c' || echo './'`fftw_test.c; \ then mv ".deps/fftw_test.Tpo" ".deps/fftw_test.Po"; \ else rm -f ".deps/fftw_test.Tpo"; exit 1; \ fi if gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I./../rfftw -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT test_main.o -MD -MP -MF ".deps/test_main.Tpo" \ -c -o test_main.o `test -f 'test_main.c' || echo './'`test_main.c; \ then mv ".deps/test_main.Tpo" ".deps/test_main.Po"; \ else rm -f ".deps/test_main.Tpo"; exit 1; \ fi /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o fftw_test fftw_test.o test_main.o ../fftw/libdfftw.la -lm mkdir .libs gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o fftw_test fftw_test.o test_main.o ../fftw/.libs/libdfftw.a -lm if gcc -DHAVE_CONFIG_H -I. -I. -I../fftw -I../fftw -I./../fftw -I./../rfftw -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -MT rfftw_test.o -MD -MP -MF ".deps/rfftw_test.Tpo" \ -c -o rfftw_test.o `test -f 'rfftw_test.c' || echo './'`rfftw_test.c; \ then mv ".deps/rfftw_test.Tpo" ".deps/rfftw_test.Po"; \ else rm -f ".deps/rfftw_test.Tpo"; exit 1; \ fi /bin/sh ../libtool --mode=link gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o rfftw_test rfftw_test.o test_main.o ../rfftw/libdrfftw.la ../fftw/libdfftw.la -lm gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -o rfftw_test rfftw_test.o test_main.o ../rfftw/.libs/libdrfftw.a ../fftw/.libs/libdfftw.a -lm make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' Making install in doc make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Nothing to be done for `install-exec-am'. /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info mkdir -p -- /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info /usr/bin/install -c -m 644 ./fftw.info /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info /usr/bin/install -c -m 644 ./fftw.info-1 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-1 /usr/bin/install -c -m 644 ./fftw.info-2 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-2 /usr/bin/install -c -m 644 ./fftw.info-3 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-3 /usr/bin/install -c -m 644 ./fftw.info-4 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-4 /usr/bin/install -c -m 644 ./fftw.info-5 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-5 install-info --info-dir=/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info install-info: warning: no info dir entry in `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' Making install in threads make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' Making install in mpi make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' if [ "-L/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib -ldrfftw -ldfftw" = '-lfftw2xf_gnu' ]; then\ cd /interfaces/fftw2xf && make lib \ compiler=gnu PRECISION=MKL_DOUBLE \ INSTALL_DIR=/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib; \ else \ cd ../fftw-2.1.5 && make install; \ fi make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' Making install in fftw make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../libtool --mode=install /usr/bin/install -c libdfftw.la /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.la /usr/bin/install -c .libs/libdfftw.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.la /usr/bin/install -c .libs/libdfftw.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.a ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.a chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.a PATH="$PATH:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include /usr/bin/install -c -m 644 dfftw.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/dfftw.h make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' Making install in rfftw make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../libtool --mode=install /usr/bin/install -c libdrfftw.la /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.la /usr/bin/install -c .libs/libdrfftw.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.la /usr/bin/install -c .libs/libdrfftw.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.a ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.a chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.a PATH="$PATH:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include /usr/bin/install -c -m 644 drfftw.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/drfftw.h make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' Making install in tests make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' Making install in doc make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Nothing to be done for `install-exec-am'. /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info /usr/bin/install -c -m 644 ./fftw.info /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info /usr/bin/install -c -m 644 ./fftw.info-1 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-1 /usr/bin/install -c -m 644 ./fftw.info-2 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-2 /usr/bin/install -c -m 644 ./fftw.info-3 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-3 /usr/bin/install -c -m 644 ./fftw.info-4 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-4 /usr/bin/install -c -m 644 ./fftw.info-5 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-5 install-info --info-dir=/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info install-info: warning: no info dir entry in `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' Making install in threads make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' Making install in mpi make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' if [ "-L/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib -ldrfftw -ldfftw" = '-lfftw2xf_gnu' ]; then\ cd /interfaces/fftw2xf && make lib \ compiler=gnu PRECISION=MKL_DOUBLE \ INSTALL_DIR=/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib; \ else \ cd ../fftw-2.1.5 && make install; \ fi make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' Making install in fftw make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../libtool --mode=install /usr/bin/install -c libdfftw.la /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.la /usr/bin/install -c .libs/libdfftw.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.la /usr/bin/install -c .libs/libdfftw.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.a ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.a chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdfftw.a PATH="$PATH:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include /usr/bin/install -c -m 644 dfftw.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/dfftw.h make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/fftw' Making install in rfftw make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../libtool --mode=install /usr/bin/install -c libdrfftw.la /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.la /usr/bin/install -c .libs/libdrfftw.lai /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.la /usr/bin/install -c .libs/libdrfftw.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.a ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.a chmod 644 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64/libdrfftw.a PATH="$PATH:/sbin" ldconfig -n /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 ---------------------------------------------------------------------- Libraries have been installed in: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include /usr/bin/install -c -m 644 drfftw.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/drfftw.h make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/rfftw' Making install in tests make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/tests' Making install in doc make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' make[4]: Nothing to be done for `install-exec-am'. /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info /usr/bin/install -c -m 644 ./fftw.info /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info /usr/bin/install -c -m 644 ./fftw.info-1 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-1 /usr/bin/install -c -m 644 ./fftw.info-2 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-2 /usr/bin/install -c -m 644 ./fftw.info-3 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-3 /usr/bin/install -c -m 644 ./fftw.info-4 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-4 /usr/bin/install -c -m 644 ./fftw.info-5 /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info-5 install-info --info-dir=/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info install-info: warning: no info dir entry in `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/info/fftw.info' make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/doc' Making install in threads make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/threads' Making install in mpi make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib64 /bin/sh ../mkinstalldirs /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5/mpi' make[3]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[4]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[3]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/fftw-2.1.5' ar rv /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/librism.a rism1d_c.o solvmdl_c.o rism1d_potential_c.o rism1d_closure_c.o rism1d_kh_c.o rism1d_hnc_c.o rism1d_py_c.o rism1d_mv0_c.o rism1d_psen_c.o quaternion.o rism_util.o rism_report_c.o rism3d_grid_c.o rism3d_closure_c.o rism3d_kh_c.o rism3d_hnc_c.o rism3d_psen_c.o rism3d_c.o rism3d_potential_c.o rism3d_csv.o rism3d_opendx.o rism3d_solv_c.o rism3d_solu_c.o pubfft.o rism_fft.o rism_nxtsec.o rdxvv.o mdiis_orig_c.o mdiis_blas_c.o mdiis_blas2_c.o mdiis_c.o fce_c.o erfcfun.o safemem.o blend.o timer_c.o r - rism1d_c.o r - solvmdl_c.o r - rism1d_potential_c.o r - rism1d_closure_c.o r - rism1d_kh_c.o r - rism1d_hnc_c.o r - rism1d_py_c.o r - rism1d_mv0_c.o r - rism1d_psen_c.o r - quaternion.o r - rism_util.o r - rism_report_c.o r - rism3d_grid_c.o r - rism3d_closure_c.o r - rism3d_kh_c.o r - rism3d_hnc_c.o r - rism3d_psen_c.o r - rism3d_c.o r - rism3d_potential_c.o r - rism3d_csv.o r - rism3d_opendx.o r - rism3d_solv_c.o r - rism3d_solu_c.o r - pubfft.o r - rism_fft.o r - rism_nxtsec.o r - rdxvv.o r - mdiis_orig_c.o r - mdiis_blas_c.o r - mdiis_blas2_c.o r - mdiis_c.o r - fce_c.o r - erfcfun.o r - safemem.o r - blend.o r - timer_c.o ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/librism.a cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ rism1d.f > _rism1d.f gfortran -c -O3 -mtune=generic -ffree-form -o rism1d.o _rism1d.f gfortran -ffree-form -o rism1d rism1d.o \ /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/librism.a \ /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/blas.a /bin/mv rism1d /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/rism' (cd cifparse && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/cifparse' flex -t cifparse.l | sed 's/yy/cifp/g' > lex.cif.c /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/yacc -v -d cifparse.y sed 's/yy/cifp/g' < y.tab.c > cifp.tab.c sed 's/yy/cifp/g' < y.tab.h > cifp.tab.h rm -f y.tab.c y.tab.h gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ lex.cif.c gcc -c -Dflex -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ cifp.tab.c gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ cifparse.c cifparse.c: In function ‘ndb_cif_write_category’: cifparse.c:287:70: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] cifparse.c: In function ‘ndb_cif_print_formatted_item_value’: cifparse.c:370:25: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] cifparse.c:388:25: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] cifparse.c: In function ‘ndb_cif_init’: cifparse.c:470:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] cifparse.c: In function ‘ndb_cif_new_datablock’: cifparse.c:538:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] cifparse.c: In function ‘ndb_cif_get_item_value’: cifparse.c:1478:19: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] cifparse.c:1497:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] rm -f cifparse.a ar rv cifparse.a lex.cif.o cifp.tab.o cifparse.o ar: creating cifparse.a a - lex.cif.o a - cifp.tab.o a - cifparse.o ranlib cifparse.a mv cifparse.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/cifparse' (cd sff && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/sff' gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o binpos.o binpos.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o conjgrad.o conjgrad.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o lmodC.o lmodC.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o memutil.o memutil.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o nblist.o nblist.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o newton.o newton.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o nmode.o nmode.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o prm.o prm.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o rand2.o rand2.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o sasad.o sasad.c flex -t mm_options.l | sed -e 's/{stdout}/{DONTchangeSTDOUThere}/' -e 's/yy/mmo/g' -e 's/stdout/nabout/' -e 's/DONTchangeSTDOUThere/stdout/' > lex.mm_options.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o sff.o sff.c In file included from sff.c:859:0: eff.c: In function ‘mme34’: eff.c:4242:8: warning: passing argument 3 of ‘rism_thermo_’ from incompatible pointer type [enabled by default] In file included from sff.c:32:0: sff.h:215:8: note: expected ‘double *’ but argument is of type ‘double (*)[20]’ gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o time.o time.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o xminC.o xminC.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DRISMSFF -o AmberNetcdf.o AmberNetcdf.c if [ -n "-DRISMSFF" ]; then \ cd ../rism && \ rm -f amber_rism_interface.o && \ make amber_rism_interface.o && \ cp -f amber_rism_interface.o ../sff/. ; \ else \ touch amber_rism_interface.o ;\ fi make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/rism' cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX -DRISM_LINPROJ amber_rism_interface.f > _amber_rism_interface.f gfortran -c -O3 -mtune=generic -ffree-form -o amber_rism_interface.o _amber_rism_interface.f make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/rism' rm -f /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libsff.a ar rv /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libsff.a binpos.o conjgrad.o lmodC.o memutil.o nblist.o newton.o nmode.o prm.o rand2.o sasad.o sff.o time.o xminC.o AmberNetcdf.o amber_rism_interface.o ar: creating /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libsff.a a - binpos.o a - conjgrad.o a - lmodC.o a - memutil.o a - nblist.o a - newton.o a - nmode.o a - prm.o a - rand2.o a - sasad.o a - sff.o a - time.o a - xminC.o a - AmberNetcdf.o a - amber_rism_interface.o ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libsff.a gcc -o /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/hcp_getpdb hcp_getpdb.c make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/sff' (cd pbsa && make libinstall ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/pbsa' gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o interface.o interface.c cpp -traditional -P -DBINTRAJ pbsaapi.f > _pbsaapi.f gfortran -c -O3 -mtune=generic -ffree-form -o pbsaapi.o _pbsaapi.f cpp -traditional -P -DBINTRAJ -DLIBPBSA pb_read.f > _pb_read.f gfortran -c -O3 -mtune=generic -ffree-form -o pb_read.LIBPBSA.o _pb_read.f cd ../lib && make nxtsec.o random.o make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: `random.o' is up to date. make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/lib' rm -f libpbsa.a ar rv libpbsa.a interface.o pbsaapi.o myopen.o pb_read.LIBPBSA.o pb_force.o pb_fddrv.o pb_iimdrv.o sa_driver.o pb_nlsolver.o pb_lsolver.o dsvdc.o timer.o pb_init.o pb_exmol.o np_force.o pb_direct.o pb_list.o pb_write.o pb_mpfrc.o decomp.o rgroup.o rfree.o coed20.o indexg.o irre32.o phidev.o project.o qld.o coed6.o irre31.o miniop.o prodis.o qint.o wint.o transf.o curv.o GrToPr.o jumps.o problem.o IIM.o amg.o aux1r5.o amg1r5.o regular.o ctime.o gmres.o bicg.o project.o transf.o dslubc.o dslugm.o curv.o irre31.o irre32.o aux1r5.o problem.o wint.o dchkw.o ds2y.o GrToPr.o dgmres.o amg1r5.o dslui.o dsluti.o dsmv.o dsmtv.o dsilus.o jumps.o dbcg.o qld.o phidev.o dpigmr.o dslui2.o dslui4.o isdbcg.o qs2i1d.o xermsg.o d1mach.o xercnt.o xerhlt.o drlcal.o j4save.o isdgmr.o fdump.o xerprn.o dorth.o dhels.o xersve.o dheqr.o i1mach.o xgetua.o dxlcal.o svdcmp.o svbksb.o pythag.o ../lib/random.o ar: creating libpbsa.a a - interface.o a - pbsaapi.o a - myopen.o a - pb_read.LIBPBSA.o a - pb_force.o a - pb_fddrv.o a - pb_iimdrv.o a - sa_driver.o a - pb_nlsolver.o a - pb_lsolver.o a - dsvdc.o a - timer.o a - pb_init.o a - pb_exmol.o a - np_force.o a - pb_direct.o a - pb_list.o a - pb_write.o a - pb_mpfrc.o a - decomp.o a - rgroup.o a - rfree.o a - coed20.o a - indexg.o a - irre32.o a - phidev.o a - project.o a - qld.o a - coed6.o a - irre31.o a - miniop.o a - prodis.o a - qint.o a - wint.o a - transf.o a - curv.o a - GrToPr.o a - jumps.o a - problem.o a - IIM.o a - amg.o a - aux1r5.o a - amg1r5.o a - regular.o a - ctime.o a - gmres.o a - bicg.o a - project.o a - transf.o a - dslubc.o a - dslugm.o a - curv.o a - irre31.o a - irre32.o a - aux1r5.o a - problem.o a - wint.o a - dchkw.o a - ds2y.o a - GrToPr.o a - dgmres.o a - amg1r5.o a - dslui.o a - dsluti.o a - dsmv.o a - dsmtv.o a - dsilus.o a - jumps.o a - dbcg.o a - qld.o a - phidev.o a - dpigmr.o a - dslui2.o a - dslui4.o a - isdbcg.o a - qs2i1d.o a - xermsg.o a - d1mach.o a - xercnt.o a - xerhlt.o a - drlcal.o a - j4save.o a - isdgmr.o a - fdump.o a - xerprn.o a - dorth.o a - dhels.o a - xersve.o a - dheqr.o a - i1mach.o a - xgetua.o a - dxlcal.o a - svdcmp.o a - svbksb.o a - pythag.o a - ../lib/random.o ranlib libpbsa.a /bin/mv libpbsa.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/pbsa' (cd nab && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/nab' gcc -DBINDIR='"."' -DINCDIR='"."' -DLIBDIR='"."' \ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -DCC='"gcc"' -DCPP='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/ucpp -l"' -DFLIBS='"-L/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib -lsff -lpbsa -lrism -ldrfftw -ldfftw /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/blas.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libnetcdf.a -lgfortran "' -o nab nab.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nab2c.o nab2c.c flex nablex.l /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/yacc -d nabgrm.y /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/yacc: 3 shift/reduce conflicts. gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o cgen.o cgen.c gcc -c -Dflex -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ y.tab.c (cd ../semantics; make) make[2]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/semantics' gcc -DDATDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat"' -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o parse parse.c ./parse *.rules ./parse: 82 symbols. ./parse: 19 types, lastuser = 14, v_error = 14. ./parse: 9 classes. ./parse: 8 kinds. ./parse: 4 accesses. ./parse: 27 attributes. ./parse: 40 rules. ./parse: 40 used symbols. ./parse: 15 used types. ./parse: 7 used classes. ./parse: 7 used kinds. ./parse: 0 errors. make[2]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/semantics' mv ../semantics/checkexpr.c . gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o checkexpr.o checkexpr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dumpnode.o dumpnode.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o errormsg.o errormsg.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o fixexpr.o fixexpr.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o genavscode.o genavscode.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o node.o node.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o symbol.o symbol.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o nab2c nab2c.o cgen.o checkexpr.o dumpnode.o errormsg.o fixexpr.o genavscode.o node.o symbol.o y.tab.o ./nab -c allatom_to_dna3.nab gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o axis2frame.o axis2frame.c gcc -c -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ bonded_atoms.c gcc -c -DDATDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat"' -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ boundsutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o chirvol.o chirvol.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o database.o database.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o deform_ener.o deform_ener.c ./nab -c dna3.nab ./nab -c dna3_to_allatom.nab gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o dump.o dump.c flex -t dg_options.l | sed -e 's/{stdout}/{DONTchangeSTDOUThere}/' -e 's/yy/dgo/g' -e 's/stdout/nabout/' -e 's/DONTchangeSTDOUThere/stdout/' > lex.dg_options.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ embed.c ./nab -c -DDATDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat"' -O0 fd_helix.nab gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o frameutil.o frameutil.c gcc -c -DDATDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat"' -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ getdist.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o hashutil.o hashutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o jacobi.o jacobi.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o match.o match.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o matop.o matop.c gcc -c -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ molio.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molsurf.o molsurf.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o molutil.o molutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nab2avs.o nab2avs.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o nab2geom.o nab2geom.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o pointutil.o pointutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o prm.o prm.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o regexp.o regexp.c gcc -c -DDATDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat"' -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ reslib.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o select_atoms.o select_atoms.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o traceback.o traceback.c gcc -c -Dflex -O3 -mtune=generic -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ mme_init.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o stringutil.o stringutil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o temputil.o temputil.c gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -c -o tm_malloc.o tm_malloc.c ./nab -c bdna.nab ./nab -c dg_helix.nab ./nab -c getchivol.nab ./nab -c getres.nab ./nab -c getseq_from_pdb.nab ./nab -c getxyz_from_pdb.nab ./nab -c -DBINDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin"' -DDATDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat"' getpdb_prm.nab ./nab -c getpdb_rlb.nab ./nab -c linkprot.nab ./nab -c link_na.nab ./nab -c -DDATDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/dat"' na_anal.nab ./nab -c setboundsfromdb.nab ./nab -c setchiplane.nab ./nab -c wc_basepair.nab ./nab -c wc_complement.nab ./nab -c wc_helix.nab ./nab -c yammp.nab rm -f libnab.a ar rv libnab.a allatom_to_dna3.o axis2frame.o bonded_atoms.o boundsutil.o chirvol.o database.o deform_ener.o dna3.o dna3_to_allatom.o dump.o embed.o fd_helix.o frameutil.o getdist.o hashutil.o jacobi.o match.o matop.o molio.o molsurf.o molutil.o nab2avs.o nab2geom.o pointutil.o prm.o regexp.o reslib.o select_atoms.o traceback.o mme_init.o stringutil.o temputil.o tm_malloc.o bdna.o dg_helix.o getchivol.o getres.o getseq_from_pdb.o getxyz_from_pdb.o getpdb_prm.o getpdb_rlb.o linkprot.o link_na.o na_anal.o setboundsfromdb.o setchiplane.o wc_basepair.o wc_complement.o wc_helix.o yammp.o ar: creating libnab.a a - allatom_to_dna3.o a - axis2frame.o a - bonded_atoms.o a - boundsutil.o a - chirvol.o a - database.o a - deform_ener.o a - dna3.o a - dna3_to_allatom.o a - dump.o a - embed.o a - fd_helix.o a - frameutil.o a - getdist.o a - hashutil.o a - jacobi.o a - match.o a - matop.o a - molio.o a - molsurf.o a - molutil.o a - nab2avs.o a - nab2geom.o a - pointutil.o a - prm.o a - regexp.o a - reslib.o a - select_atoms.o a - traceback.o a - mme_init.o a - stringutil.o a - temputil.o a - tm_malloc.o a - bdna.o a - dg_helix.o a - getchivol.o a - getres.o a - getseq_from_pdb.o a - getxyz_from_pdb.o a - getpdb_prm.o a - getpdb_rlb.o a - linkprot.o a - link_na.o a - na_anal.o a - setboundsfromdb.o a - setchiplane.o a - wc_basepair.o a - wc_complement.o a - wc_helix.o a - yammp.o ranlib libnab.a gcc -DBINDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin"' \ -DINCDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include"' \ -DLIBDIR='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib"' \ -DCC='"gcc"' -DCPP='"/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/ucpp -l"' -DFLIBS='"-L/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib -lsff -lpbsa -lrism -ldrfftw -ldfftw /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/arpack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/lapack.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/blas.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libnetcdf.a -lgfortran "' \ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \ -o nab_install nab.c mv -f nab_install /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/nab mv -f nab2c /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin mv -f libnab.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib rm -f /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/nabcode.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/defreal.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/nab.h cp nabcode.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include cp nabtypes.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include cp defreal.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include cp nab.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include cp xmin_opt.h lmod_opt.h nab_netcdf.h /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include cp lmodprmtop /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/nab' (cd nss && make install ) make[1]: Entering directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/nss' /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/nab -c symop.nab symop.c: In function ‘MAT_ico’: symop.c:220:1: warning: passing argument 2 of ‘rot4p’ from incompatible pointer type [enabled by default] In file included from symop.c:6:0: /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/include/nabcode.h:186:14: note: expected ‘REAL_T *’ but argument is of type ‘REAL_T (*)[3]’ /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/nab -c tss.c ar rv /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libnab.a symop.o tss.o a - symop.o a - tss.o ranlib /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/lib/libnab.a /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/nab -c matextract.nab /home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/bin/nab -o matextract matextract.o /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../x86_64-suse-linux/bin/ld: cannot find -ldrfftw /usr/lib64/gcc/x86_64-suse-linux/4.7/../../../../x86_64-suse-linux/bin/ld: cannot find -ldfftw collect2: error: ld returned 1 exit status cc failed! make[1]: *** [matextract] Error 1 make[1]: Leaving directory `/home/bioinfo6.corp/Projects/test/amber/AmberTarFiles/amber11/AmberTools/src/nss' make: *** [serial] Error 2