Re: [AMBER] this a very green neophyte's question.

From: Jason Swails <>
Date: Thu, 31 Jul 2014 19:31:26 -0400

On Thu, Jul 31, 2014 at 6:31 PM, J.W. Halley <>

> Thanks again for the help but I got stock quickly trying to implement it.
> I get
> parm protonpumprhodospinAR23AM6.pdb
> -bash: parm: command not found
> same thing with trajin
> Maybe I have to load something else, or maybe my system won't let me do
> this?

​You have to run those commands in cpptraj, not just in the shell.

I would suggest​ working through some of the tutorials to get a handle on
how to use Amber.


Jason M. Swails
Rutgers University
Postdoctoral Researcher
AMBER mailing list
Received on Thu Jul 31 2014 - 17:00:02 PDT
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