On Thu, Jul 31, 2014 at 6:31 PM, J.W. Halley <woods.woods1.spa.umn.edu>
wrote:
>
> Thanks again for the help but I got stock quickly trying to implement it.
> I get
>
> parm protonpumprhodospinAR23AM6.pdb
> -bash: parm: command not found
>
> same thing with trajin
>
> Maybe I have to load something else, or maybe my system won't let me do
> this?
>
You have to run those commands in cpptraj, not just in the shell.
I would suggest working through some of the tutorials to get a handle on
how to use Amber.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Jul 31 2014 - 17:00:02 PDT
