Hi Jason,
I just started the clean reinstalation of the whole Amber14,
and I can confirm, that after your action the problem with AT patch 7
disappeared (see below).
Thank you very much for this prompt action !
Best wishes,
Marek
Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::] 100.0%
Done.
Applying AmberTools 14/update.6
Downloading AmberTools 14/update.7 (190.96 KB)
Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::] 100.0%
Done.
Applying AmberTools 14/update.7
Downloading updates for Amber 14
Downloading Amber 14/update.1 (21.70 KB)
Applying Amber 14/update.1
Downloading Amber 14/update.2 (1.67 KB)
Applying Amber 14/update.2
Downloading Amber 14/update.3 (2.29 KB)
Applying Amber 14/update.3
NOTE: update_amber only updates the raw source code! You must recompile if
you want
any changes to take effect!
Dne Mon, 28 Jul 2014 15:58:21 +0200 Jason Swails <jason.swails.gmail.com>
napsal/-a:
> On Mon, Jul 28, 2014 at 7:49 AM, Marc van der Kamp
> <marcvanderkamp.gmail.com
>> wrote:
>
>> Hi,
>> I've experienced the same problem with applying update.7.
>> It looks like it is a problem with the patch; I've tried this on our
>> local
>> cluster (Rocks 5.3 - Essentially RedHat) and on my MacBook (MacOS
>> 10.7.5).
>> In both cases, the patch failed to apply:
>>
>> $ ./update_amber --update
>> Preparing to apply updates... please wait.
>> Downloading updates for AmberTools 14
>> Downloading AmberTools 14/update.7 (192.92 KB)
>> Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::] 100.0%
>> Done.
>> Applying AmberTools 14/update.7
>> instance: .patches/AmberTools14_Unapplied_Patches/update.7 failed to
>> apply.
>> No changes made from this patch
>>
>
> OK, I was actually unaware of this (but I've been traveling the past few
> days). I found the problem and fixed it. The updating script did not
> make
> any changes from this patch, but it did cache the patch file to avoid
> having to go online and re-download it. Since you _want_ update_amber to
> go online and re-download it, you have to tell update_amber to delete any
> unapplied patches for specifically that reason. So make sure you run the
> command
>
> ./update_amber --remove-unapplied
>
> before trying to reconfigure and recompile.
>
> Let me know if you run into any problems.
>
> All the best,
> Jason
>
--
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Received on Mon Jul 28 2014 - 07:30:03 PDT
