[AMBER] Hydrogen bond analysis

From: menwer momo <masalmeh2007.yahoo.com>
Date: Sat, 19 Jul 2014 03:56:41 -0700

Dear Amber users,
In the tutorial3/section6, file  analyse_hbond.ptraj
I understood that one should exclude the N and C termini and any proline within the protein

but I am not sure what does 20.N :2-20.H in the following line means.

acceptor mask :2-11,13-16,20.N :2-20.H

Many Thanks.
AMBER mailing list
Received on Sat Jul 19 2014 - 04:00:02 PDT
Custom Search