[AMBER] autoimage doesn't work

From: 肖立 <xiaoli19871216.gmail.com>
Date: Wed, 9 Jul 2014 12:03:25 -0700

I try to use the autoimage to reimage an RNA chain and a protein chain fit
into the right position with a file name "autoimage"

trajin rna_15a_4.mdcrd
trajout rna_15a_image.mdcrd

And I run the command
cpptraj -p rna_15a.prmtop<autoimage

The output shows:

PARM [rna_15a.prmtop]: Setting up 0 actions.
----- [rna_15a_4. <http://rna_15a_4.nc/>*mdcrd*] (1-250, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 250 frames and processed 250 frames.


  There are no data sets set up for analysis.

It will generate an mdcrd file rna_15a_image.mdcrd. But it takes no action
to reimage the positions.

Could anyone tells what the problem is and what's the right way to do it?

Thank you very much!
Li Xiao
University of California, Irvine
Email: xiaoli19871216.gmail.com
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Received on Wed Jul 09 2014 - 12:30:03 PDT
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