[AMBER] autoimage doesn't work

From: 肖立 <xiaoli19871216.gmail.com>
Date: Wed, 9 Jul 2014 12:03:25 -0700

Hi,all
I try to use the autoimage to reimage an RNA chain and a protein chain fit
into the right position with a file name "autoimage"

trajin rna_15a_4.mdcrd
autoimage
trajout rna_15a_image.mdcrd

And I run the command
cpptraj -p rna_15a.prmtop<autoimage

The output shows:

PARM [rna_15a.prmtop]: Setting up 0 actions.
----- [rna_15a_4. <http://rna_15a_4.nc/>*mdcrd*] (1-250, 1) -----
 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% Complete.

Read 250 frames and processed 250 frames.

ACTION OUTPUT:

DATASETS:
  There are no data sets set up for analysis.

It will generate an mdcrd file rna_15a_image.mdcrd. But it takes no action
to reimage the positions.

Could anyone tells what the problem is and what's the right way to do it?

Thank you very much!
-- 
Li Xiao
University of California, Irvine
Email: xiaoli19871216.gmail.com
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 09 2014 - 12:30:03 PDT
Custom Search