[AMBER] pmemdTI test failure

From: Blake Mertz <blake.mertz.mail.wvu.edu>
Date: Tue, 8 Jul 2014 13:32:49 -0400

Hello,

I'm compiled the parallel version of Amber14 against gcc-4.7.4 and
openmpi-1.6.5-8 on a debian testing box (kernel 3.11), but when I ran the
tests, two groups failed, pmemdTI and emil_pmemd_tip3p. Here's some of the
difs:

possible FAILURE: check campTI.out.dif
/usr/local/src/amber14/test/pmemdTI/campTI
339,342c339,342
< Etot = 0. EKtot = 0. EPtot = 4.3929
< BOND = 36.5819 ANGLE = -2.5879 DIHED =
 -0.5307
< 1-4 NB = -0.0292 1-4 EEL = -85.1242 VDWAALS =
2.5131
< EELEC = 53.5699 EHBOND = 0. RESTRAINT = 0.
---
>  Etot   =         0.  EKtot   =         0.  EPtot      =         0.
>  BOND   =         0.  ANGLE   =         0.  DIHED      =         0.
>  1-4 NB =         0.  1-4 EEL =         0.  VDWAALS    =         0.
>  EELEC  =         0.  EHBOND  =         0.  RESTRAINT  =         0.
345d344
<  DV/DL  =         4.3929
and
possible FAILURE:  check mdout.emil.0.1.dif
/usr/local/src/amber14/test/emil/emil_pmemd_tip3p
196,200c196,199
<  Etot   =         0.  EKtot   =         0.  EPtot      =     35484.36
<  BOND   =      -248.06  ANGLE   =      -306.01  DIHED      =      -480.71
<  1-4 NB =      -192.19  1-4 EEL =      4543.51  VDWAALS    =     -6625.23
<  EELEC  =     38793.07  EHBOND  =         0.  RESTRAINT  =         0.
<  DV/DL  =     35484.36
---
>  Etot   =         0.  EKtot   =         0.  EPtot      =         0.
>  BOND   =         0.  ANGLE   =         0.  DIHED      =         0.
>  1-4 NB =         0.  1-4 EEL =         0.  VDWAALS    =         0.
>  EELEC  =         0.  EHBOND  =         0.  RESTRAINT  =         0.
I didn't find anything specific to these tests on the mailing list, so I
wasn't sure if how concerned I should be, since both of these tests deal
with FE calculations, which I don't need at the present moment. Thanks for
any help!
Blake
-- 
Assistant Professor
C. Eugene Bennett Department of Chemistry
(304) 293-9166
www.mertzlab-biophysics.com <http://www.mertzlab-biophysics.com/index.html>
"Life is not easy for any of us. But what of that? We must have
perseverance and above all confidence in ourselves. We must believe that we
are gifted for something and that this thing must be attained." Marie Curie
"Start by doing what's necessary; then do what's possible; and suddenly you
are doing the impossible." St. Francis of Assissi
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Received on Tue Jul 08 2014 - 11:00:02 PDT
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