Hello,
I am having issues installing AmberTools 13. After successfully compiling it with the command ./compile gnu, whenever I use the make install command I get this error message that seems to point to a programming error in a filenames vardata.c:
make[1]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src'
cd netcdf/src && make -j 1 && make -j 1 install
make[2]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src'
make all-recursive
make[3]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src'
Making all in f90
make[4]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/f90'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/f90'
Making all in fortran
make[4]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/fortran'
make all-am
make[5]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/fortran'
make[5]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/fortran'
make[4]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/fortran'
Making all in libsrc
make[4]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/libsrc'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/libsrc'
Making all in nctest
make[4]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/nctest'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/nctest'
Making all in ncgen
make[4]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/ncgen'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/ncgen'
Making all in ncdump
make[4]: Entering directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/ncdump'
depbase=`echo vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`; \
if gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -I../libsrc -I../libsrc -DNDEBUG -DpgiFortran -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -MT vardata.o -MD -MP -MF "$depbase.Tpo" -c -o vardata.o vardata.c; \
then mv -f "$depbase.Tpo" "$depbase.Po"; else rm -f "$depbase.Tpo"; exit 1; fi
vardata.c: In function ‘float_epsilon’:
vardata.c:71: error: ‘FLT_EPSILON’ undeclared (first use in this function)
vardata.c:71: error: (Each undeclared identifier is reported only once
vardata.c:71: error: for each function it appears in.)
vardata.c: In function ‘double_epsilon’:
vardata.c:102: error: ‘DBL_EPSILON’ undeclared (first use in this function)
make[4]: *** [vardata.o] Error 1
make[4]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src/ncdump'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src/netcdf/src'
make[1]: *** [/cbpc/malachi/Amber/amber12//include/netcdf.mod] Error 2
make[1]: Leaving directory `/cbpc/malachi/Amber/amber12/AmberTools/src'
make: *** [install] Error 2
Any help on this issue would be greatly appreciated.
Best,
Malachi Phillips
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Received on Wed Jul 02 2014 - 12:30:04 PDT
