[AMBER] Visualizing average solvent-oxygen density/occupancy from an MD trajectory

From: Abhishek Mukhopadhyay <abmukho.vt.edu>
Date: Tue, 1 Jul 2014 20:34:10 -0400

Hi,

Is there a straightforward way to use an MD trajectory to visualize average
water's oxygen and hydrogen density (separately) or preferably 3D visualize
the average solvent polarization of water around a solute using ptraj + any
of the visualization softwares.

sincerely,
Abhishek
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Received on Tue Jul 01 2014 - 18:00:03 PDT