checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for swig... no
checking for python... /usr/bin/python
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate

Using Boost (v1_38_0) provided with MTK++ 


Cannot find log4cxx

checking for X... libraries , headers 
checking QTDIR... 
Using TinyXML provided with MTK++ 

checking for doxygen... no
checking for latex... yes
checking for dvips... yes
checking for gs... yes
checking for dot... yes
checking for diff... yes
checking for gcc option to accept ISO C99... unsupported
checking for gcc option to accept ISO C89... (cached) none needed
checking for gcc option to accept ISO Standard C... (cached) none needed
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking for ANSI C header files... (cached) yes
checking whether stat file-mode macros are broken... no
checking whether time.h and sys/time.h may both be included... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for stdlib.h... (cached) yes
checking algorithm usability... yes
checking algorithm presence... yes
checking for algorithm... yes
checking cassert usability... yes
checking cassert presence... yes
checking for cassert... yes
checking cmath usability... yes
checking cmath presence... yes
checking for cmath... yes
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking cstring usability... yes
checking cstring presence... yes
checking for cstring... yes
checking deque usability... yes
checking deque presence... yes
checking for deque... yes
checking fstream usability... yes
checking fstream presence... yes
checking for fstream... yes
checking limits usability... yes
checking limits presence... yes
checking for limits... yes
checking list usability... yes
checking list presence... yes
checking for list... yes
checking queue usability... yes
checking queue presence... yes
checking for queue... yes
checking for string... yes
checking for zlib.h... yes
checking if zlib should be used... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for working strtod... yes
checking for pow... yes
checking for sqrt... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/Log/Makefile
config.status: creating src/tinyxml/Makefile
config.status: creating src/Diagnostics/Makefile
config.status: creating src/Statistics/Makefile
config.status: creating src/Molecule/Makefile
config.status: creating src/Parsers/Makefile
config.status: creating src/MM/Makefile
config.status: creating src/GA/Makefile
config.status: creating src/Minimizers/Makefile
config.status: creating src/Graph/Makefile
config.status: creating src/Utils/Makefile
config.status: creating tests/Makefile
config.status: creating tools/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands

------------------------------------------------------------------------------
MTKpp-0.2.0 package configuration:
------------------------------------------------------------------------------

Directories:
  - prefix ....... : /usr/local
  - docdir ....... : NONE/doc
  - exec_prefix .. : ${prefix}
  - includedir ... : ${prefix}/include
  - libdir ....... : ${exec_prefix}/lib

Switches:
  - debug ........ : Off 
  - html ......... : no

Documentation tools:
  - Doxygen ...... : no
  - LaTeX ........ : yes
  - Dvips ........ : yes
  - GhostScript .. : yes
  - Dot .......... : yes

Testing tools:
  - Diff ......... : yes

External libs:
  - MKL .......... : 
  - BOOST ........ : /usr/local/amber14/AmberTools/src/mtkpp/lib/boost_1_38_0
  - LOG4CXX ...... : 
  - XERCES ....... : 
  - QT ........... : 

Compiler/linker flags/libs/defs:
  - CPPFLAGS ..... : 
  - CC ........... : gcc
  - CFLAGS ....... : -O2 -fPIC -DHAVE_ZLIB
  - CXX .......... : g++
  - CXXFLAGS ..... : -g -O2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB
  - LDFLAGS ...... : 
  - LIBS ......... : 
  - FLIBS ........ :  -lz
  - C99 OK ....... : yes
  - ZLIB ......... : yes

------------------------------------------------------------------------------
Now type 'make && make install' to build and install MTKpp-0.2.0 package
------------------------------------------------------------------------------