This is not I meant.
Lets say, I have two pdb structures of the same protein, which generated
through average md trajectories after different interactions. These two
structures are slightly different. I want to find out the rmsd between
them. I know VMD can do that. But I want to know whether it is possible in
ptraj or cpptraj?
On Fri, Jun 27, 2014 at 4:19 PM, Soumendranath Bhakat <
bhakatsoumendranath.gmail.com> wrote:
> Check with this
> trajin md1.mdcrd
> atomicfluct out RMSF :1-198 byres
> change the residues as u want
>
> On 6/28/14, Chinthaka Ratnaweera <cnr88.msstate.edu> wrote:
> > I want to calculate per residue rmsd between two proteins. Can it be done
> > using ptraj?
> >
> > Thanks
> > _______________________________________________
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> >
>
>
> --
> Thanks & Regards;
> Soumendranath Bhakat
>
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>
--
Chinthaka Nadun Ratnaweera
Hand Lab Rm 1126
Mississippi State University
310 Presidents Circle
Starkville, MS 39762
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Received on Fri Jun 27 2014 - 15:00:02 PDT
