I know the procedure will work (assuming I communicated it well)
because I built the files using it.
On Tue, Jun 24, 2014 at 1:32 PM, Lachele Foley <lf.list.gmail.com> wrote:
> You really do need to follow all the directions I gave for modifying
> your pdb file. You also have to use the leap commands I gave you.
>
>
>
> On Tue, Jun 24, 2014 at 11:18 AM, Shreeramesh <shreeramesh.gmail.com> wrote:
>> Hi,
>>
>> I have run tleap gammacyclodextrin using GLYCAM_06h
>>
>> However the linkage between GLC1 and GLC8 has been broken in solvated
>> complex, though the gammacyclodextrin is intact in input file and GLC has
>> been changed to 4GA
>>
>> I also enclosed the input file of gammacyclodextrin (rec.pdb) and solvated
>> complex (com_solvated.pdb)
>>
>> Can anybody suggest to solve this problem? How to maintain the linkage
>> between GLC1 and GLC8 in solvated complex
>>
>> _______________________________________________
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>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
> --
> :-) Lachele
> Lachele Foley
> CCRC/UGA
> Athens, GA USA
--
:-) Lachele
Lachele Foley
CCRC/UGA
Athens, GA USA
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Received on Tue Jun 24 2014 - 11:00:03 PDT
