GLYCAM-Web does not yet support the generation of cyclic structures.
That is on our to-do list. :-)
But, to give a brief answer to your nomenclature question, gamma
cyclodextrin would be:
{c[4Glcpa1-]<8>}
That is, the <8> indicates eight repeats of [4Glcpa1-], the c
represents a cyclic structure, and the curly braces contain the cyclic
portion.
On Mon, Jun 23, 2014 at 8:08 AM, Shreeramesh <shreeramesh.gmail.com> wrote:
> Hi,
>
> I need .pdb structure for gammacyclodextrin to run a tleap using GLYCAM
> force field.
>
> How to get a condensed GLYCAM notation and .pdb file format for
> gammacyclodextrin using GLYCAM builder?
>
>
>
> ...
> Ramesh
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--
:-) Lachele
Lachele Foley
CCRC/UGA
Athens, GA USA
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Received on Mon Jun 23 2014 - 11:00:02 PDT
