[AMBER] MTK++ Error

From: Kshatresh Dutta Dubey <kshatresh.gmail.com>
Date: Sat, 21 Jun 2014 23:43:44 +0300

Dear All,

     I am using MTK++ for metal ion parameterisation for a protein
containing FE. The input for FEHID_sidechain.bcl is like :

# Create FE1-9 from FE-401
createResidue FE1 in CLR
addToResidue /NAME/CLR/FE1 /NAME/2/.FE-401/FE..
# Create FE2-10 from FE-402
createResidue FE2 in CLR
addToResidue /NAME/CLR/FE2 /NAME/3/.FE-402/FE..

when I am compiling FEHID_sidechain.bcl, it shows error like :
 ### ### ### ###
 ### MTK++ Info ###
 ### Function: selection::parse ###
 ### Message: selection string = /FEHID/2/.FE-401/FE..
 ### ### ### ###

 ### ### ### ###
 ### MTK++ Error ###
 ### Function: selection::parse ###
 ### Message: User supplied 2, however residue 401 has a name of FE
 ### ### ### ###

 ### ### ### ###
 ### MTK++ Error ###
 ### Function: MCPB::addToResidue ###
 ### Message: Error in selection parsing

however in pdb residue 401 is really corresponds to FE, I dont see any
error in PDB file. Please help me to get rid of this error. I will be
grateful for all suggestions.
Thanks in advance.

Regards
Kshatresh
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Received on Sat Jun 21 2014 - 14:00:02 PDT
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